View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18710_high_3 (Length: 411)

Name: NF18710_high_3
Description: NF18710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18710_high_3
NF18710_high_3
[»] chr5 (13 HSPs)
chr5 (237-400)||(38422897-38423060)
chr5 (19-162)||(38422594-38422737)
chr5 (78-128)||(6538878-6538928)
chr5 (78-135)||(38500951-38501008)
chr5 (80-132)||(13461774-13461827)
chr5 (78-128)||(27340877-27340927)
chr5 (78-128)||(29402190-29402240)
chr5 (78-135)||(1760372-1760429)
chr5 (78-107)||(7927363-7927392)
chr5 (82-119)||(35088582-35088619)
chr5 (78-122)||(35972582-35972626)
chr5 (121-149)||(38422779-38422807)
chr5 (78-114)||(42220181-42220217)
[»] chr8 (10 HSPs)
chr8 (78-128)||(20065624-20065674)
chr8 (78-128)||(8955701-8955751)
chr8 (78-128)||(44711986-44712036)
chr8 (78-135)||(28623117-28623174)
chr8 (78-122)||(14029262-14029306)
chr8 (78-128)||(8841038-8841088)
chr8 (78-128)||(36064038-36064088)
chr8 (78-128)||(39021456-39021506)
chr8 (78-128)||(43873704-43873754)
chr8 (78-135)||(36740322-36740379)
[»] chr3 (10 HSPs)
chr3 (78-128)||(29705911-29705961)
chr3 (78-128)||(40419655-40419705)
chr3 (78-128)||(47849680-47849730)
chr3 (78-128)||(55344309-55344359)
chr3 (76-135)||(24703888-24703947)
chr3 (79-124)||(12764126-12764172)
chr3 (78-135)||(34607926-34607983)
chr3 (78-114)||(20893269-20893305)
chr3 (78-118)||(29222423-29222463)
chr3 (78-122)||(52727467-52727511)
[»] chr6 (5 HSPs)
chr6 (78-135)||(29197732-29197789)
chr6 (78-135)||(1434670-1434727)
chr6 (80-128)||(9851314-9851362)
chr6 (78-122)||(26668504-26668548)
chr6 (82-122)||(32876487-32876527)
[»] chr1 (8 HSPs)
chr1 (78-135)||(43755684-43755741)
chr1 (78-128)||(27563492-27563542)
chr1 (81-128)||(37515927-37515974)
chr1 (78-128)||(18959012-18959062)
chr1 (78-128)||(42615868-42615918)
chr1 (78-135)||(42299192-42299249)
chr1 (91-128)||(46003489-46003526)
chr1 (78-122)||(7188261-7188305)
[»] chr7 (14 HSPs)
chr7 (67-122)||(49128997-49129052)
chr7 (80-135)||(23329912-23329967)
chr7 (69-128)||(29034100-29034159)
chr7 (78-128)||(3247077-3247127)
chr7 (78-135)||(38096445-38096502)
chr7 (78-114)||(32919007-32919043)
chr7 (77-120)||(2741910-2741953)
chr7 (78-128)||(16567324-16567374)
chr7 (78-128)||(16598288-16598338)
chr7 (78-128)||(18157198-18157248)
chr7 (79-109)||(31407157-31407187)
chr7 (78-127)||(37355140-37355189)
chr7 (78-135)||(41966340-41966397)
chr7 (78-118)||(3143976-3144016)
[»] chr4 (20 HSPs)
chr4 (78-135)||(13252545-13252602)
chr4 (78-128)||(23094384-23094434)
chr4 (78-128)||(30866361-30866411)
chr4 (78-128)||(31804342-31804392)
chr4 (78-128)||(40308449-40308499)
chr4 (78-128)||(45548797-45548847)
chr4 (78-122)||(9162074-9162118)
chr4 (78-128)||(925075-925125)
chr4 (78-128)||(29694066-29694116)
chr4 (78-128)||(44571437-44571487)
chr4 (78-128)||(51389324-51389374)
chr4 (78-135)||(52263884-52263942)
chr4 (78-128)||(55996430-55996480)
chr4 (75-128)||(6239385-6239438)
chr4 (78-135)||(45779297-45779354)
chr4 (78-122)||(169521-169565)
chr4 (76-128)||(17805458-17805510)
chr4 (78-114)||(28203400-28203436)
chr4 (78-122)||(33484127-33484171)
chr4 (78-122)||(44170638-44170682)
[»] chr2 (15 HSPs)
chr2 (66-128)||(36180501-36180561)
chr2 (78-135)||(13553155-13553212)
chr2 (78-128)||(3091749-3091799)
chr2 (78-128)||(9202529-9202579)
chr2 (78-128)||(26321710-26321760)
chr2 (78-128)||(26321878-26321928)
chr2 (78-128)||(36816429-36816479)
chr2 (78-120)||(44085282-44085324)
chr2 (78-114)||(5095980-5096016)
chr2 (78-122)||(6365194-6365238)
chr2 (78-118)||(17112849-17112889)
chr2 (78-118)||(26802251-26802291)
chr2 (79-135)||(29170823-29170879)
chr2 (91-135)||(33030108-33030152)
chr2 (78-122)||(40326135-40326179)
[»] scaffold0121 (1 HSPs)
scaffold0121 (78-128)||(3935-3986)
[»] scaffold0154 (1 HSPs)
scaffold0154 (78-128)||(9861-9911)
[»] scaffold0119 (1 HSPs)
scaffold0119 (78-122)||(2245-2289)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 9e-83; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 237 - 400
Target Start/End: Original strand, 38422897 - 38423060
Alignment:
Q  237 tttctaccgcatcactttagatgagattcacaatgttcttgaggagtttaaacacacatataatttctattggtaatctataataaaaaatagcttacaa 336  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38422897 tttctaccgcatcactttagatgagattcacaatgtttttgaggagtttaaacacacatataatttctattggtaatctataaaaaaaaatagcttacaa 38422996  T
Q  337 ttacttggacaatttttattattaaactattgttaacgtgaataaaattattcatatcacctat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38422997 ttacttggacaatttttattattaaactattgttaacgtgaataaaattattcatatcacctat 38423060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 38422594 - 38422737
Alignment:
Q  19 cttggacacgtaaaatatcctctggttcattggaagatcaaatttgcttgagaaataatatatttatacaatcattttgtgataattttttgacaatttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38422594 cttggacacgtaaaatatcctctggttcattggaagatcaaatttgcttgagaaataatatatttatacaatcattttatgataattttttgacaatttt 38422693  T
Q  119 ctctttcataatcatatatgcgtagtttttccgttgtgtacaat 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38422694 ctctttcataatcatatatgcgtagtttttccgttgtgtacaat 38422737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 6538878 - 6538928
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||| ||||||||||||||||||||||| |||||||||||||    
T  6538878 atatttgtacaattattttgtgataattttttgacaactttctctttcata 6538928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 38500951 - 38501008
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||| ||||| |||||||||| ||||||||||||| ||||||||||||| ||||||    
T  38500951 atatttgtacaaccattttgtgacaattttttgacaactttctctttcatactcatat 38501008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 13461774 - 13461827
Alignment:
Q  80 atttatacaatcattttgtgataa-ttttttgacaattttctctttcataatca 132  Q
    |||||||||||||||||||||||| |||  |||||||||||||| |||||||||    
T  13461774 atttatacaatcattttgtgataactttcgtgacaattttctctctcataatca 13461827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 27340877 - 27340927
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||||| ||| | ||||||||||||||||||||||| |||||    
T  27340877 atatttgtacaatcactttattataattttttgacaattttctctctcata 27340927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 29402190 - 29402240
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||||| ||||| ||||||||||||||| ||||| |||||||    
T  29402190 atatttgtacaatcactttgtaataattttttgacaactttctttttcata 29402240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 1760372 - 1760429
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||| |||||||||||| |||||  | ||||| |||||||||||||||||| ||||||    
T  1760372 atatgtatacaatcattgtgtgacgactttttcacaattttctctttcatactcatat 1760429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 107
Target Start/End: Original strand, 7927363 - 7927392
Alignment:
Q  78 atatttatacaatcattttgtgataatttt 107  Q
    ||||||||||||||||||||||||||||||    
T  7927363 atatttatacaatcattttgtgataatttt 7927392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 35088582 - 35088619
Alignment:
Q  82 ttatacaatcattttgtgataattttttgacaattttc 119  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  35088582 ttatacaatcattttgtgatagtttttagacaattttc 35088619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 35972582 - 35972626
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||| |||||||||||||| | | |||||||||||||||||||    
T  35972582 atatttgtacaatcattttgttacatttttttgacaattttctct 35972626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 38422779 - 38422807
Alignment:
Q  121 ctttcataatcatatatgcgtagtttttc 149  Q
    |||||||||||||||||||||||||||||    
T  38422779 ctttcataatcatatatgcgtagtttttc 38422807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 42220181 - 42220217
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaa 114  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  42220181 atatttatacaattattttatgataattttttgacaa 42220217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 20065624 - 20065674
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  20065624 atatttatacaataattttgtgataattttttgacaattttctctctcata 20065674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 8955751 - 8955701
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    ||||||| ||||||||||||||||||||||| ||||||||  |||||||||    
T  8955751 atatttaaacaatcattttgtgataatttttagacaatttcttctttcata 8955701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 44711986 - 44712036
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||| |||||    
T  44711986 atatttatacaattaatttgtaataattttttgacaattttctctctcata 44712036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 28623174 - 28623117
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||| ||||| |||| |||||||| |||||||||| ||||||||||||| ||||||    
T  28623174 atatttgtacaaccattatgtgataactttttgacaactttctctttcatactcatat 28623117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 14029306 - 14029262
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||| || ||||| |||||||||||||||||||||||||||||    
T  14029306 atatttgtataatcaatttgtgataattttttgacaattttctct 14029262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 8841038 - 8841088
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||| || ||||||| ||||||||||||||||||||| |||||    
T  8841038 atatttgtacaaccactttgtgagaattttttgacaattttctctatcata 8841088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 36064038 - 36064088
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||||||||||||| || |||| ||||||||||||| |||||    
T  36064038 atatttgtacaatcattttgtgacaacttttggacaattttctctctcata 36064088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 39021506 - 39021456
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||| ||||||||||||| |||||||||| | |||||||||||    
T  39021506 atatttgtacaaccattttgtgataactttttgacaactctctctttcata 39021456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 43873754 - 43873704
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||| |||||||||| ||||||||||||| | |||||||||||    
T  43873754 atatttgtacaaccattttgtgacaattttttgacaactctctctttcata 43873704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 36740322 - 36740379
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||| ||||||||||| |||||||||||| ||||| |||| || ||||| ||||||    
T  36740322 atatttgtacaatcatttagtgataatttttagacaactttccctctcatattcatat 36740379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 29705911 - 29705961
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  29705911 atatttatacaattattttgtgataattttttgataattttctctttcata 29705961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 40419705 - 40419655
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| |||||    
T  40419705 atatttgtacaatcattttgtgataatttttagacaattttctctctcata 40419655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 47849680 - 47849730
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||| |||||||||||||||||||||||| |||||||| ||||    
T  47849680 atatttgtacaaccattttgtgataattttttgacaactttctcttacata 47849730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 55344359 - 55344309
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||| ||||||||||||| || |||||||||||||||||||||    
T  55344359 atatttgtacaaccattttgtgataacttcttgacaattttctctttcata 55344309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 24703888 - 24703947
Alignment:
Q  76 atatatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||||| ||||| |||||| |||||||||||  ||||||||||||||| || ||||||    
T  24703888 atatatttgtacaaccattttttgataatttttgaacaattttctctttcttactcatat 24703947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 12764172 - 12764126
Alignment:
Q  79 tatttatacaatcattttgtgataatt-ttttgacaattttctcttt 124  Q
    |||||||| |||||||||||||||||| |||| ||||||||||||||    
T  12764172 tatttatataatcattttgtgataatttttttaacaattttctcttt 12764126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 34607983 - 34607926
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||| ||||| || ||||||| ||||||| || |||||||||||||||| ||||||    
T  34607983 atatttgtacaaccactttgtgacaatttttagataattttctctttcatactcatat 34607926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 20893305 - 20893269
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaa 114  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  20893305 atatttgtacaaccattttgtgataattttttgacaa 20893269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 29222463 - 29222423
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaatttt 118  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  29222463 atatttatacaatcattttatgataatttttgaacaatttt 29222423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 52727511 - 52727467
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||| |||||||| ||| ||||||||||||||||| |||||||    
T  52727511 atatttgtacaatcactttatgataattttttgacaactttctct 52727467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 29197732 - 29197789
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||    
T  29197732 atatttgtacaatcattttgtgataatttttggacaattttctctctcatattcatat 29197789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 1434727 - 1434670
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||| |||||| | ||||||||||||||||||||||||| ||| ||||| ||||||    
T  1434727 atatttgtacaattaatttgtgataattttttgacaattttttctctcatattcatat 1434670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 9851362 - 9851314
Alignment:
Q  80 atttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||| |||||||||||||||||||| |||||| |||||| ||| |||||    
T  9851362 atttgtacaatcattttgtgataatattttgataattttttctctcata 9851314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 26668504 - 26668548
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||| |||||||||||||  |||||||||||| ||||||||||    
T  26668504 atatttgtacaatcattttgctataattttttgataattttctct 26668548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 32876527 - 32876487
Alignment:
Q  82 ttatacaatcattttgtgataattttttgacaattttctct 122  Q
    ||||||||||||||||||| |||||||  ||||||||||||    
T  32876527 ttatacaatcattttgtgacaatttttaaacaattttctct 32876487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 43755741 - 43755684
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||||||    
T  43755741 atatttgtacaaccattttatgataattttttgacaattttctctttcatactcatat 43755684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 27563492 - 27563542
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||||||||||  ||||||||||||||||||||||| |||||    
T  27563492 atatttgtacaatcattttgctataattttttgacaattttctctctcata 27563542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 37515927 - 37515974
Alignment:
Q  81 tttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||||||  ||||| ||||||||||||||||||||||||| |||||    
T  37515927 tttatacaactattttatgataattttttgacaattttctctctcata 37515974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 18959012 - 18959062
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||||||||| |||||||| | || |||||||||||||||||| |||||    
T  18959012 atatttatacaaccattttgttacaactttttgacaattttctctctcata 18959062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 42615868 - 42615918
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||||||||| | ||||||||||||||| ||| |||||||||    
T  42615868 atatttgtacaatcattttttaataattttttgacaactttttctttcata 42615918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 42299249 - 42299192
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||| ||||| |||||||||||||||||| ||||||||| | | ||||| ||||||    
T  42299249 atatttgtacaaccattttgtgataatttttagacaattttttttctcatattcatat 42299192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 46003489 - 46003526
Alignment:
Q  91 cattttgtgataattttttgacaattttctctttcata 128  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  46003489 cattttgtgacaattttttaacaattttctctttcata 46003526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 7188261 - 7188305
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||| ||| || ||||||||||||||||| |||||||||||||    
T  7188261 atatttgtacgattattttgtgataatttttagacaattttctct 7188305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 49129052 - 49128997
Alignment:
Q  67 tgagaaataatatatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||||||||||||||| |||| |||||||||| || ||||||||||||||||||    
T  49129052 tgagaaataatatatttaaacaaacattttgtgacaactttttgacaattttctct 49128997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 23329912 - 23329967
Alignment:
Q  80 atttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||| ||||| |||||| | ||||||||||||||||||||||||||||| ||||||    
T  23329912 atttgtacaaccattttattataattttttgacaattttctctttcatactcatat 23329967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 29034100 - 29034159
Alignment:
Q  69 agaaataatatatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    ||||| || |||||| |||||||||||||||| |||||||||| |||||||||| |||||    
T  29034100 agaaaaaagatatttgtacaatcattttgtgacaattttttgataattttctctctcata 29034159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 3247077 - 3247127
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||||||||| |||| ||||||||||||||||||| |||||||    
T  3247077 atatttgtacaatcatttagtgacaattttttgacaattttctatttcata 3247127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 38096502 - 38096445
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||| ||||| |||||||||| ||||||||||||| | ||||||||||| ||||||    
T  38096502 atatttgtacaaccattttgtgacaattttttgacaactctctctttcatactcatat 38096445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 32919043 - 32919007
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaa 114  Q
    ||||||||||||||||||||||| |||||||||||||    
T  32919043 atatttatacaatcattttgtgacaattttttgacaa 32919007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 2741953 - 2741910
Alignment:
Q  77 tatatttatacaatcattttgtgataattttttgacaattttct 120  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||    
T  2741953 tatatttgtacaattattttatgataattttttgacaattttct 2741910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 16567324 - 16567374
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||| |||||| | |||| ||||||||||||||||||||||||    
T  16567324 atatttgtacaaccattttattataactttttgacaattttctctttcata 16567374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 16598338 - 16598288
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||| |||||| | |||| ||||||||||||||||||||||||    
T  16598338 atatttgtacaaccattttattataactttttgacaattttctctttcata 16598288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 18157248 - 18157198
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||| || ||||||||||||||| ||||||||||||| |||||    
T  18157248 atatttgtacaaccactttgtgataatttttagacaattttctctctcata 18157198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 109
Target Start/End: Original strand, 31407157 - 31407187
Alignment:
Q  79 tatttatacaatcattttgtgataatttttt 109  Q
    |||||||||||||||||||||||||||||||    
T  31407157 tatttatacaatcattttgtgataatttttt 31407187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 37355140 - 37355189
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcat 127  Q
    ||||||||||||| ||||| |||||||||||  |||| ||||||||||||    
T  37355140 atatttatacaattattttatgataatttttgaacaactttctctttcat 37355189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 41966340 - 41966397
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||| ||||| || ||||||| ||||||||||||| ||||| ||||||| ||||||    
T  41966340 atatttgtacaaccactttgtgacaattttttgacaactttctatttcatactcatat 41966397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 3144016 - 3143976
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaatttt 118  Q
    |||||| |||||||||||| | |||||||||||||||||||    
T  3144016 atatttgtacaatcattttataataattttttgacaatttt 3143976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 13252545 - 13252602
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| ||||| | ||||||    
T  13252545 atatttatataatcattttgtgataattttttgacaactttctatttcaaactcatat 13252602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 23094384 - 23094434
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||||||||||||||||| |||| ||||| |||||||||||||    
T  23094384 atatttgtacaatcattttgtgataacttttagacaactttctctttcata 23094434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 30866361 - 30866411
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||||||||| |||||| |||||||||| |||||||||||||    
T  30866361 atatttgtacaatcattttatgataaatttttgacaactttctctttcata 30866411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 31804392 - 31804342
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||||| |||||||||||||||||| |||||||||| |||||    
T  31804392 atatttgtacaatcactttgtgataattttttgataattttctctctcata 31804342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 40308449 - 40308499
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||||||||| | ||||||||||||||| |||||||||||||    
T  40308449 atatttgtacaatcattttataataattttttgacaactttctctttcata 40308499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 45548847 - 45548797
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||| |||||||||||||||||||||||| ||| |||||||||    
T  45548847 atatttgtacaaccattttgtgataattttttgacaactttttctttcata 45548797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 9162074 - 9162118
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||| |||||||||||||||| || ||||||||||||||||||    
T  9162074 atatttgtacaatcattttgtgacaactttttgacaattttctct 9162118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 925125 - 925075
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||||||||| |||||||||| || |||| ||||||||||||| |||||    
T  925125 atatttatacaaccattttgtgacaacttttagacaattttctctctcata 925075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 29694116 - 29694066
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||| || ||||||||||||||||| || ||||||||||||||||    
T  29694116 atatttctactattattttgtgataatttttagataattttctctttcata 29694066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 44571487 - 44571437
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    ||||||||||||| | ||||| |||||||||||| |||||||||| |||||    
T  44571487 atatttatacaattaatttgtaataattttttgataattttctctctcata 44571437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 51389324 - 51389374
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||||||||| || | ||||||||||||| |||||||||||||    
T  51389324 atatttgtacaatcatttagtaacaattttttgacaactttctctttcata 51389374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 52263942 - 52263884
Alignment:
Q  78 atatttatacaatcattttgtgataattttt-tgacaattttctctttcataatcatat 135  Q
    ||||||||||||||||||| ||||||||||| | |||| ||||||| ||||| ||||||    
T  52263942 atatttatacaatcattttttgataatttttataacaactttctctctcatactcatat 52263884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 55996430 - 55996480
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||||||||| | | ||||||||||||||||||||| |||||    
T  55996430 atatttgtacaatcattttctaacaattttttgacaattttctctctcata 55996480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 6239385 - 6239438
Alignment:
Q  75 aatatatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    ||||||||| ||||| |||||||  ||||||||||||||| ||||||| |||||    
T  6239385 aatatatttgtacaaccattttgcaataattttttgacaactttctctctcata 6239438  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 45779354 - 45779297
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||| | ||||| ||||||    
T  45779354 atatttatacaactattttgttataattttttgacaactttctttctcatactcatat 45779297  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 169565 - 169521
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||| ||||| |||||||||| || ||||||||||||||||||    
T  169565 atatttgtacaaccattttgtgacaactttttgacaattttctct 169521  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 17805458 - 17805510
Alignment:
Q  76 atatatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||||| |||||  ||||| | ||||||||||||||||||||||| |||||    
T  17805458 atatatttgtacaactattttttaataattttttgacaattttctctctcata 17805510  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 28203400 - 28203436
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaa 114  Q
    |||||| |||||||||||||| |||||||||||||||    
T  28203400 atatttgtacaatcattttgtaataattttttgacaa 28203436  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 33484171 - 33484127
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||| ||||| |||||||||||||||||| ||||| |||||||    
T  33484171 atatttgtacaaccattttgtgataatttttggacaactttctct 33484127  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 44170682 - 44170638
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||| ||||| |||||||| ||||||||||||||| |||||||    
T  44170682 atatttgtacaaccattttgttataattttttgacaactttctct 44170638  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 36180501 - 36180561
Alignment:
Q  66 ttgagaaataatatatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||||||||||| ||||  |||| ||||| ||||||||||||||||||| |||||||||||    
T  36180501 ttgagaaataatattttta--caattattttatgataattttttgacaattatctctttcata 36180561  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 13553155 - 13553212
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||| ||||| || ||||||||||||||| ||||||||||||| ||||| ||||||    
T  13553155 atatttgtacaaccactttgtgataatttttggacaattttctctctcatactcatat 13553212  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 3091749 - 3091799
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||  |||||||||||| |||||||||||||||||| |||||    
T  3091749 atatttgtacaactattttgtgataactttttgacaattttctctctcata 3091799  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 9202579 - 9202529
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||| |||||| ||| ||||||||||||| |||||||||||||    
T  9202579 atatttctacaaccattttatgacaattttttgacaactttctctttcata 9202529  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 26321760 - 26321710
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||| ||||||||||||| ||||||||||||| |||| |||||    
T  26321760 atatttgtacaaccattttgtgataactttttgacaatttcctctatcata 26321710  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 26321928 - 26321878
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| ||||| ||||||||||||| ||||||||||||| |||| |||||    
T  26321928 atatttgtacaaccattttgtgataactttttgacaatttcctctatcata 26321878  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 36816479 - 36816429
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    ||||||||||||  ||||| ||||||||||||||||| | |||||||||||    
T  36816479 atatttatacaactattttatgataattttttgacaactctctctttcata 36816429  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 44085282 - 44085324
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttct 120  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||    
T  44085282 atatttatacaattattttgtgacaatttttggacaattttct 44085324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 5096016 - 5095980
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaa 114  Q
    |||||| |||||||||||||||||||||||| |||||    
T  5096016 atatttgtacaatcattttgtgataatttttggacaa 5095980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 6365194 - 6365238
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||| ||||| || ||||||| |||||||||||||||||||||    
T  6365194 atatttgtacaaccactttgtgacaattttttgacaattttctct 6365238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 17112889 - 17112849
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaatttt 118  Q
    ||||||||| ||| ||||||||||||||||| |||||||||    
T  17112889 atatttatataattattttgtgataatttttggacaatttt 17112849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 26802291 - 26802251
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaatttt 118  Q
    ||||||||||||| |||||||||||||||||  ||||||||    
T  26802291 atatttatacaattattttgtgataatttttgaacaatttt 26802251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 29170879 - 29170823
Alignment:
Q  79 tatttatacaatcattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    ||||| ||||| |||||||| | ||||||||||||  ||||||||||||| ||||||    
T  29170879 tatttgtacaaccattttgttacaattttttgacatctttctctttcatattcatat 29170823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 33030152 - 33030108
Alignment:
Q  91 cattttgtgataattttttgacaattttctctttcataatcatat 135  Q
    |||||||||||||||||||||||| ||||||| || || ||||||    
T  33030152 cattttgtgataattttttgacaactttctctctcgtactcatat 33030108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 40326135 - 40326179
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||||||||| ||| |||| | |||||||||||||||||||||    
T  40326135 atatttatacaaccatgttgtcacaattttttgacaattttctct 40326179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 3986 - 3935
Alignment:
Q  78 atatttatacaatcattttgtgataattttt-tgacaattttctctttcata 128  Q
    |||||||||||||||||||||||||||||||  || |||||||||| |||||    
T  3986 atatttatacaatcattttgtgataatttttgagataattttctctctcata 3935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 9911 - 9861
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctctttcata 128  Q
    |||||| |||||||||||| | | ||||||||||||||||||||| |||||    
T  9911 atatttgtacaatcattttttcacaattttttgacaattttctctctcata 9861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 2289 - 2245
Alignment:
Q  78 atatttatacaatcattttgtgataattttttgacaattttctct 122  Q
    |||||| |||||||||||||  |||||||||||| ||||||||||    
T  2289 atatttgtacaatcattttgctataattttttgataattttctct 2245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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