View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18710_high_6 (Length: 372)
Name: NF18710_high_6
Description: NF18710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18710_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 168 - 349
Target Start/End: Original strand, 17412866 - 17413043
Alignment:
| Q |
168 |
catgagacagagatattgtggaaatatagagagaaatattcttacaaaatttgaaacctcccattgggaaaacattgttgtcgtcgtcgttggccattgt |
267 |
Q |
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| T |
17412866 |
catgagacagagatattgtggaaatatagagagaaatattcttacaaaatttgaaacctcccattgggaaaacattgtt---gtcgtcgttggtcattgt |
17412962 |
T |
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| Q |
268 |
tgagaaaatgcagaaaggaacaaggaaacaagaagcaatgaacaagagaaagtggggagagagggttttgaagtaagtggct |
349 |
Q |
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| T |
17412963 |
tgagaaaatgaagaaaggaacaaggaaacaagaagcaatgaacaagagaaagtgggga-agagggttttgaagtaagtggct |
17413043 |
T |
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Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 17412716 - 17412807
Alignment:
| Q |
18 |
tgagtaactaaagaagagacattcaaacctcaagaatatcaacatggtcagctctactcccttcattggtaaattcattgagtaatgctgag |
109 |
Q |
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| T |
17412716 |
tgagtaactaaagaagagacattcaaacctcaagaatatcaacatggtcagctctactcccttcattggtaaattcattgagtaatgctgag |
17412807 |
T |
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