View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18710_low_1 (Length: 473)
Name: NF18710_low_1
Description: NF18710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18710_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 27324605 - 27324298
Alignment:
| Q |
5 |
ccaaattcaattaaaatttattcataataccaaaattatccttactcgtttccttcccactcttatgaatgatacgtgattttaattcacgttaggtaaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27324605 |
ccaaattcaattaaaatttattcataataccaaaattatccttactcatttccttcccactcttatgaatggtacgtgattttaattcacgttaggtaaa |
27324506 |
T |
|
| Q |
105 |
ttaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcttgcatctacactgtcttcacaca |
204 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27324505 |
ttaagtatatgtgatctgaattcatgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgcatctacactgtcttcacaca |
27324406 |
T |
|
| Q |
205 |
gccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccctctcaaaggcaaacaccaaag |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27324405 |
cccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccctctcaaatgcaaacaccaaag |
27324306 |
T |
|
| Q |
305 |
catataag |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
27324305 |
catataag |
27324298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 27324254 - 27324137
Alignment:
| Q |
356 |
aaaatcaatcaaagcaagcaccaaagcatgcttcgtctaattaaatctctcttatttgcaattgaaaaacactattcccttttattttgtttatttcaca |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27324254 |
aaaatcaatcaaagcaagcaccaaagcatgcttcgtctaattaaatctctcttatttgcaattgaaaaacactattcccttttattttgtttatttcaca |
27324155 |
T |
|
| Q |
456 |
aacttttgcttttgtatt |
473 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
27324154 |
aacttttgcttttgtatt |
27324137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 28359400 - 28359093
Alignment:
| Q |
5 |
ccaaattcaattaaaatttattcataataccaaaattatccttactcgtttccttcccactcttatgaatgatacgtgattttaattcacgttaggtaaa |
104 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28359400 |
ccaaattcatttaaaatttattcataatatcaaaattatccttactcatttccttcccactcttatgaatgatacgtgattttaattcacgttaggtaaa |
28359301 |
T |
|
| Q |
105 |
ttaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcttgcatctacactgtcttcacaca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
28359300 |
ttaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatccacctgatacatgattcctttgttgcctgcatctacattgtcttcacaca |
28359201 |
T |
|
| Q |
205 |
gccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccctctcaaaggcaaacaccaaag |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
28359200 |
cccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccctctcaaatgcaaacaccaaag |
28359101 |
T |
|
| Q |
305 |
catataag |
312 |
Q |
| |
|
|||||||| |
|
|
| T |
28359100 |
catataag |
28359093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 28359049 - 28358932
Alignment:
| Q |
356 |
aaaatcaatcaaagcaagcaccaaagcatgcttcgtctaattaaatctctcttatttgcaattgaaaaacactattcccttttattttgtttatttcaca |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28359049 |
aaaatcaatcaaagcaagcaccaaagcatgcttcgtctaattaaatctctcttatttgcaattgaaaaacactattcccttttattttgtttatttcaca |
28358950 |
T |
|
| Q |
456 |
aacttttgcttttgtatt |
473 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
28358949 |
aacttttgcttttgtatt |
28358932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 3500839 - 3500529
Alignment:
| Q |
5 |
ccaaattcaattaaaatttattcataataccaaaattatccttactcgtttccttcccactcttatgaatgatacgtgattttaattcacgttaggtaaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
3500839 |
ccaaattcaattaaaatttattcataataacaaaattatccttactcatttccttcccactcttatgaatgatacatgattttaattcacgttaggtaaa |
3500740 |
T |
|
| Q |
105 |
ttaagtatatgtgatctgaattcacgtgataaaacaacaacctcaaaatc---cacctgatacatgattcctttgttgcttgcatctacactgtcttcac |
201 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3500739 |
ttaagtatacgtgatctgaattcacgtgataaaacaacaacctcaaaatccaccacctgatacatgattcatttgttgcctgcatctacactgtcttcac |
3500640 |
T |
|
| Q |
202 |
acagccatggatgatgatttccaccaaccaacaatatgaaccatcatggaggatgcaattgggaactatcagtgtgaaaccctctcaaaggcaaacacca |
301 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |
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| T |
3500639 |
acaaccatggatgatgatttccaccaaccaacaatatgaactatcatggaggatgcaattgcgaactatcagtgtgaaaccttctcaaatgcaaacacca |
3500540 |
T |
|
| Q |
302 |
aagcatataag |
312 |
Q |
| |
|
||||||||||| |
|
|
| T |
3500539 |
aagcatataag |
3500529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 356 - 473
Target Start/End: Complemental strand, 3500486 - 3500369
Alignment:
| Q |
356 |
aaaatcaatcaaagcaagcaccaaagcatgcttcgtctaattaaatctctcttatttgcaattgaaaaacactattcccttttattttgtttatttcaca |
455 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3500486 |
aaaatcaatcaaagcaagcaccaaaacatgcttcgtctaattaaatctctcttatttgcaattgaaaaacactattcccttttattttgtttatttcaca |
3500387 |
T |
|
| Q |
456 |
aacttttgcttttgtatt |
473 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3500386 |
aacttttgcttttgtatt |
3500369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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