View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18710_low_10 (Length: 241)
Name: NF18710_low_10
Description: NF18710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18710_low_10 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 48 - 241
Target Start/End: Complemental strand, 32924840 - 32924648
Alignment:
| Q |
48 |
acgagatacagagatataagaggagccaccattgatggcaatacaatcatcacctgtttataagaaaaccaactcattttaaaattgcacatatatatta |
147 |
Q |
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| T |
32924840 |
acgagatacagagatataagaggagccaccattgatggcaatacaatcatcacctatttataagaaaaccaactcattttaaaattgcacatatatatta |
32924741 |
T |
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| Q |
148 |
aactcatctcaaaatacttaaattgaggtttataagataaaaataaactttgaatacctgttcaaatagtggaatcttctatcaagatattctt |
241 |
Q |
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| T |
32924740 |
aactcatctcaaaatacttaaattaaggtttataagataaaaataaacttt-attacctgttcgaatagtggaatcttctatcaagatattctt |
32924648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 2525171 - 2525046
Alignment:
| Q |
14 |
ataaccttatcccatggcctggtccacatgcaacacgagatacagagatataagaggagccaccattgatggcaatacaatcatcacctgtttataagaa |
113 |
Q |
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| T |
2525171 |
ataaccttattccatggccgggtccacaaaaaacacgggtaacattgatgtaagaagaaccaccattgagggcaatacaatcatcacctatttataagaa |
2525072 |
T |
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| Q |
114 |
aaccaactcattttaaaattgcacat |
139 |
Q |
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| T |
2525071 |
ataaaattcattttaaaattggacat |
2525046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 2541836 - 2541793
Alignment:
| Q |
65 |
aagaggagccaccattgatggcaatacaatcatcacctgtttat |
108 |
Q |
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| T |
2541836 |
aagaggagccaccattgatggcaatacaatcatcacctgtttat |
2541793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 11658437 - 11658555
Alignment:
| Q |
10 |
gaaaataaccttatcccatggcctggtccacatgcaacacgagatacagagatataagaggagccaccattgatggcaatacaatcatcacctgtttata |
109 |
Q |
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|||||||||||||||||||| ||| ||||||| |||| ||||| | ||| |||||||| || | |||| |||||||||||||||||||||||||| |
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| T |
11658437 |
gaaaataaccttatcccatgacctagtccacaagcaatacgagtagcgctgatgtaagaggaaccttctttgacggcaatacaatcatcacctgtttata |
11658536 |
T |
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| Q |
110 |
agaaaaccaactcatttta |
128 |
Q |
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| T |
11658537 |
cgaaagtcaactcatttta |
11658555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 2550152 - 2550053
Alignment:
| Q |
16 |
aaccttatcccatggcctggtccacatgcaacacgagatacagagatataagaggagccaccattgatggcaatacaatcatcacctgtttataagaaaa |
115 |
Q |
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| T |
2550152 |
aaccttatcccatggcctggtccacaagtaacccgagtagcattgataaaagtggagccaccatttactgcaatacaatcgtcacctatttaaaagaaaa |
2550053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 32925547 - 32925513
Alignment:
| Q |
13 |
aataaccttatcccatggcctggtccacatgcaac |
47 |
Q |
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| T |
32925547 |
aataaccttatcccatggcctggtccacatgcaac |
32925513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 13558700 - 13558570
Alignment:
| Q |
12 |
aaataaccttatcccatggcctggtccacatgcaacacgagatacagagatataagaggagccaccattgatggcaatacaatcatcacctgtttataag |
111 |
Q |
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|||||||||||| ||||| ||||| |||||||||||||||| || |||| |||||||| || ||||| | |||||||||||||||||||| ||| ||| |
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| T |
13558700 |
aaataaccttattccatgccctggaccacatgcaacacgagtagcatagatgtaagaggatcccccattaacggcaatacaatcatcacctgcttacaag |
13558601 |
T |
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| Q |
112 |
aaaaccaactcattttaaaattgcacatata |
142 |
Q |
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|||| ||||||| |||| ||||||||||||| |
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| T |
13558600 |
aaaagcaactcaatttataattgcacatata |
13558570 |
T |
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