View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18710_low_11 (Length: 237)

Name: NF18710_low_11
Description: NF18710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18710_low_11
NF18710_low_11
[»] chr7 (6 HSPs)
chr7 (1-221)||(33491109-33491333)
chr7 (158-221)||(33419911-33419974)
chr7 (1-81)||(33412830-33412910)
chr7 (158-221)||(33412775-33412837)
chr7 (35-66)||(28812598-28812629)
chr7 (37-81)||(33419967-33420011)
[»] chr8 (1 HSPs)
chr8 (112-158)||(3647508-3647554)
[»] chr4 (1 HSPs)
chr4 (112-154)||(22435345-22435387)
[»] chr6 (1 HSPs)
chr6 (112-157)||(15057138-15057183)
[»] chr2 (2 HSPs)
chr2 (112-157)||(18182492-18182537)
chr2 (112-157)||(18182623-18182668)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33491333 - 33491109
Alignment:
Q  1 tgtgtgtcagccattaaaaggcttcaagcaaaaaccctcaaattagtatta---gatcaaacacaagaagggttagggagctagcgggtagcgttttgat 97  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||   ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  33491333 tgtgtgtcagccattaaaaggcttcaagcaaaaactcttaaattagtattattagatcaaacacaagaaggattagggagctagcgggtagcgctttgat 33491234  T
Q  98 gatattggggttggc-aatgtcacatgacattggcactccaatatcatcaaagtgctacccagagctagtaaagattaaaagtatcatgtaaataatgga 196  Q
    || |||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33491233 gacattgtggttggccaatgtcacatgacattggcaccccaatatcatcaaagtgctacccagagctagtaaagattaaaagtatcatgtaaataatgga 33491134  T
Q  197 tcaagaactaacttgatgagcataa 221  Q
    |||||||||||||||||||||||||    
T  33491133 tcaagaactaacttgatgagcataa 33491109  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 33419974 - 33419911
Alignment:
Q  158 agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33419974 agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataa 33419911  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 33412910 - 33412830
Alignment:
Q  1 tgtgtgtcagccattaaaaggcttcaagcaaa-aaccctcaaattagtattagatcaaacacaagaagggttagggagctag 81  Q
    |||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  33412910 tgtgggtcagccattaaaaggcttcaagccaagaaccctcaaattagtattagatcaaa-tcaagaagggttagagagctag 33412830  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 33412837 - 33412775
Alignment:
Q  158 agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataa 221  Q
    |||||||||||||||||||| |||||||  || ||| |||||||||||||||||||||||||||    
T  33412837 agagctagtaaagattaaaa-tatcatgccaacaattgatcaagaactaacttgatgagcataa 33412775  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 66
Target Start/End: Original strand, 28812598 - 28812629
Alignment:
Q  35 ccctcaaattagtattagatcaaacacaagaa 66  Q
    ||||||||||||||||||||||||||||||||    
T  28812598 ccctcaaattagtattagatcaaacacaagaa 28812629  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 33420011 - 33419967
Alignment:
Q  37 ctcaaattagtattagatcaaacacaagaagggttagggagctag 81  Q
    |||||||||| ||||||||||||||||||| | |||| |||||||    
T  33420011 ctcaaattagcattagatcaaacacaagaatgattagagagctag 33419967  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 3647508 - 3647554
Alignment:
Q  112 caatgtcacatgacattggcactccaatatcatcaaagtgctaccca 158  Q
    |||||||||||||||||||||| ||||| ||| | ||||||||||||    
T  3647508 caatgtcacatgacattggcaccccaatgtcacccaagtgctaccca 3647554  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 22435387 - 22435345
Alignment:
Q  112 caatgtcacatgacattggcactccaatatcatcaaagtgcta 154  Q
    |||||||||||||||||||||| ||||||||| | ||||||||    
T  22435387 caatgtcacatgacattggcaccccaatatcacccaagtgcta 22435345  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 15057138 - 15057183
Alignment:
Q  112 caatgtcacatgacattggcactccaatatcatcaaagtgctaccc 157  Q
    |||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  15057138 caatgtcacatgacattgacaccccaatgtcaccaaagtgctaccc 15057183  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 18182537 - 18182492
Alignment:
Q  112 caatgtcacatgacattggcactccaatatcatcaaagtgctaccc 157  Q
    |||||||||||||||||||||| ||||| ||| | |||||||||||    
T  18182537 caatgtcacatgacattggcaccccaatgtcacccaagtgctaccc 18182492  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 18182623 - 18182668
Alignment:
Q  112 caatgtcacatgacattggcactccaatatcatcaaagtgctaccc 157  Q
    |||||||||||||||||||||| ||||| ||| | |||||||||||    
T  18182623 caatgtcacatgacattggcaccccaatgtcacccaagtgctaccc 18182668  T

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