View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18710_low_4 (Length: 395)

Name: NF18710_low_4
Description: NF18710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18710_low_4
NF18710_low_4
[»] chr7 (3 HSPs)
chr7 (18-374)||(30505180-30505536)
chr7 (343-385)||(42436814-42436856)
chr7 (348-384)||(16879225-16879261)
[»] chr4 (2 HSPs)
chr4 (349-385)||(29776906-29776942)
chr4 (354-384)||(3556201-3556231)
[»] chr2 (2 HSPs)
chr2 (354-385)||(11363878-11363909)
chr2 (352-384)||(20480071-20480103)
[»] chr8 (1 HSPs)
chr8 (355-384)||(9878356-9878385)


Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 30505536 - 30505180
Alignment:
Q  18 aaatgtgagatggatatagtgaaatatcagttgaatgaaatgcaaatgtagttggaagaaacaaatcggaaataatatgggctgtttgtgttgtgatttt 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505536 aaatgtaagatggatatagtgaaatatcagttgaatgaaatgcaaatgtagttggaagaaacaaatcggaaataatatgggctgtttgtgttgtgatttt 30505437  T
Q  118 ggcttttgttgtatggttgaagtaatgtatcataatatgaatttagaagtaaatgtaatagacttgtgtagttagcttcttcatttgtaacagacgtgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505436 ggcttttgttgtatggttgaagtaatgtatcataatatgaatttagaagtaaatgtaatagacttgtgtagttagcttcttcatttgtaacagacgtgtt 30505337  T
Q  218 ttttgtgatttgtaagggactaaagtgtgttttttctcatttaagagattattcaatcatctcttaaattaaagcgtgagggactaaattcatgattcaa 317  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30505336 ttttgtgatttgtgagggactaaagtgtgttttttctcatttaagagattattcaaccatctcttaaattaaagcgtgagggactaaattcatgattcaa 30505237  T
Q  318 tcataaattttagttcatggattaacatgaattttattttggcttaattgcattttt 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505236 tcataaattttagttcatggattaacatgaattttattttggcttaattgcattttt 30505180  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 42436814 - 42436856
Alignment:
Q  343 catgaattttattttggcttaattgcatttttggccccctatg 385  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  42436814 catgaattttcttttggcttaattgcatttttggccccctatg 42436856  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 16879225 - 16879261
Alignment:
Q  348 attttattttggcttaattgcatttttggccccctat 384  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  16879225 attttatttaggcttaattgcatttttggacccctat 16879261  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 385
Target Start/End: Complemental strand, 29776942 - 29776906
Alignment:
Q  349 ttttattttggcttaattgcatttttggccccctatg 385  Q
    ||||||||||||||||||||| |||||||||||||||    
T  29776942 ttttattttggcttaattgcacttttggccccctatg 29776906  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 354 - 384
Target Start/End: Complemental strand, 3556231 - 3556201
Alignment:
Q  354 ttttggcttaattgcatttttggccccctat 384  Q
    |||||||||||||||||||||||||||||||    
T  3556231 ttttggcttaattgcatttttggccccctat 3556201  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 354 - 385
Target Start/End: Original strand, 11363878 - 11363909
Alignment:
Q  354 ttttggcttaattgcatttttggccccctatg 385  Q
    ||||||||||||||||||||||||||||||||    
T  11363878 ttttggcttaattgcatttttggccccctatg 11363909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 20480071 - 20480103
Alignment:
Q  352 tattttggcttaattgcatttttggccccctat 384  Q
    |||||||||||||||||| ||||||||||||||    
T  20480071 tattttggcttaattgcacttttggccccctat 20480103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 384
Target Start/End: Original strand, 9878356 - 9878385
Alignment:
Q  355 tttggcttaattgcatttttggccccctat 384  Q
    ||||||||||||||||||||||||||||||    
T  9878356 tttggcttaattgcatttttggccccctat 9878385  T

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