View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18710_low_5 (Length: 391)

Name: NF18710_low_5
Description: NF18710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18710_low_5
NF18710_low_5
[»] chr1 (23 HSPs)
chr1 (1-374)||(48049764-48050138)
chr1 (48-212)||(48042138-48042303)
chr1 (119-222)||(48055356-48055461)
chr1 (268-374)||(48041692-48041797)
chr1 (50-123)||(29812820-29812893)
chr1 (50-123)||(48040176-48040249)
chr1 (55-123)||(48049410-48049478)
chr1 (55-123)||(48054682-48054750)
chr1 (49-123)||(5126507-5126581)
chr1 (49-123)||(48033106-48033180)
chr1 (49-147)||(48036700-48036798)
chr1 (54-123)||(48034714-48034783)
chr1 (50-123)||(48035761-48035834)
chr1 (50-123)||(48050612-48050685)
chr1 (50-123)||(48053130-48053203)
chr1 (50-123)||(48055946-48056019)
chr1 (55-123)||(39972786-39972854)
chr1 (55-123)||(48041327-48041395)
chr1 (48-123)||(22908327-22908402)
chr1 (50-123)||(48042838-48042911)
chr1 (50-123)||(48048645-48048719)
chr1 (68-123)||(29813662-29813717)
chr1 (57-116)||(48054322-48054381)
[»] chr4 (3 HSPs)
chr4 (50-123)||(49152530-49152603)
chr4 (50-128)||(38393558-38393636)
chr4 (64-121)||(26929298-26929355)
[»] chr2 (7 HSPs)
chr2 (48-128)||(6801047-6801127)
chr2 (48-123)||(7181567-7181642)
chr2 (54-123)||(13326995-13327064)
chr2 (50-123)||(35926120-35926193)
chr2 (55-123)||(6796500-6796568)
chr2 (55-123)||(39990583-39990651)
chr2 (55-119)||(35920134-35920198)
[»] chr3 (6 HSPs)
chr3 (52-123)||(38930468-38930539)
chr3 (49-123)||(34974806-34974880)
chr3 (54-123)||(47565676-47565745)
chr3 (55-128)||(53107637-53107710)
chr3 (54-123)||(53682985-53683054)
chr3 (55-123)||(31125756-31125824)
[»] chr7 (4 HSPs)
chr7 (54-123)||(23780472-23780541)
chr7 (55-128)||(43920605-43920678)
chr7 (49-128)||(40706104-40706183)
chr7 (64-121)||(46064797-46064854)
[»] chr6 (6 HSPs)
chr6 (55-123)||(992442-992510)
chr6 (55-123)||(10754597-10754665)
chr6 (55-123)||(10750280-10750348)
chr6 (53-128)||(18613086-18613161)
chr6 (72-123)||(32678635-32678686)
chr6 (55-123)||(10748684-10748752)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 48050138 - 48049764
Alignment:
Q  1 aaaattggttttgggcagttttcaaacactgagaatactaaattaacaaaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48050138 aaaattggttttgggcagttttcaaacactgagaatactaaattaacaaaaaatggggcattccgagaatcgaactcggaacctctcacacccaaagcga 48050039  T
Q  101 gaatcataccactagaccaaatggccatattgaagtaagcaaggttaggtgag--atatgtcttcttgtttactattgaaaatgttaatgcataccacat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  48050038 gaatcataccactagaccaaatggccatattgaagtaagcaaggttaggtgagatatatgtcttcttgtttactattgaaaatgttaatgcataccacat 48049939  T
Q  199 ggtctgcagttgtattgtaatattagttgtgcgcagaggataacttggtttatnnnnnnnnngtattagagtctacttacttatgtaccagtcaggggta 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||     
T  48049938 ggtctgcagttgtattgtaatattagttgtgcgcagaggataacttggtttat-aaaaaaaagtattagagtctacttacttatgtaccagtcaggggtt 48049840  T
Q  299 aacttgggattttatcattaaagataaagtttgataaaccatgactcacaatagtcttatatgatccgcttgtttt 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48049839 aacttgggattttatcattaaagataaagtttgataaaccatgactcacaatagtcttatatgatccgcttgtttt 48049764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 48042303 - 48042138
Alignment:
Q  48 aaaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccatattgaagtaagcaaggtta 147  Q
    |||| ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  48042303 aaaagatggggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatgcccatattgaagtaagcatggtta 48042204  T
Q  148 ggtgag--atatgtcttcttgtttactattgaaaatgttaatgcataccacatggtctgcagttgta 212  Q
    ||||||  ||||| ||||||| |||||||| ||| |||| |||||| ||||||||||||||||||||    
T  48042203 ggtgagatatatgacttcttg-ttactattaaaattgtttatgcatgccacatggtctgcagttgta 48042138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 48055461 - 48055356
Alignment:
Q  119 aaatggccatattgaagtaagcaaggttaggtgagat--atgtcttcttgtttactattgaaaatgttaatgcataccacatggtctgcagttgtattgt 216  Q
    ||||| |||||||||||||||||||||||||||||||  ||||||||||||||| || ||||| |||| ||| |||||||||||||||||||||||||||    
T  48055461 aaatgcccatattgaagtaagcaaggttaggtgagatctatgtcttcttgtttagtaatgaaattgttcatgaataccacatggtctgcagttgtattgt 48055362  T
Q  217 aatatt 222  Q
    ||||||    
T  48055361 aatatt 48055356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 268 - 374
Target Start/End: Complemental strand, 48041797 - 48041692
Alignment:
Q  268 agtctacttacttatgtaccagtcaggggtaaacttgggattttatcattaaagataaagtttgataaaccatgactcacaatagtcttatatgatccgc 367  Q
    ||||||||||||| | ||||| |||||||| ||||| |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| || |    
T  48041797 agtctacttacttttttaccattcaggggttaacttaggattttatcgttaa-gataaagtttgataaactatgactcacaatagtcttatatgacccac 48041699  T
Q  368 ttgtttt 374  Q
    |||||||    
T  48041698 ttgtttt 48041692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 29812820 - 29812893
Alignment:
Q  50 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||| ||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  29812820 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 29812893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 48040249 - 48040176
Alignment:
Q  50 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||| ||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  48040249 aaaaaggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48040176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 48049478 - 48049410
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    ||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  48049478 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48049410  T

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Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 48054750 - 48054682
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||||||||| |||||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  48054750 ggggcattccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatg 48054682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 5126581 - 5126507
Alignment:
Q  49 aaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    ||||| ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  5126581 aaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 5126507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 48033180 - 48033106
Alignment:
Q  49 aaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    ||||| ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  48033180 aaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48033106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 48036798 - 48036700
Alignment:
Q  49 aaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccatattgaagtaagcaaggtta 147  Q
    ||||| ||||||||| ||||||| ||||| | ||||||  || |||||||||||||||||||||||||||||||  |||| |||||||||| |||||||    
T  48036798 aaaaaaggggcattcggagaatcaaactccggacctctggcacccaaagcgagaatcataccactagaccaaatacccatcttgaagtaagaaaggtta 48036700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 48034783 - 48034714
Alignment:
Q  54 tggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  48034783 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48034714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 48035834 - 48035761
Alignment:
Q  50 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||| ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  48035834 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48035761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 48050685 - 48050612
Alignment:
Q  50 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||| ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  48050685 aaaagggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48050612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 48053203 - 48053130
Alignment:
Q  50 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||| |||||||||||||||| |||||||| ||||||| || ||||||||||||| ||||||||||||||||||    
T  48053203 aaaaaggggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagaccaaatg 48053130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 48056019 - 48055946
Alignment:
Q  50 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||| ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  48056019 aaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48055946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 39972786 - 39972854
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  39972786 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 39972854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 48041395 - 48041327
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  48041395 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48041327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 22908402 - 22908327
Alignment:
Q  48 aaaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||| |||||||||||||||| |||||||  ||||||| || || |||||||||||||||||||||||||||||    
T  22908402 aaaaaaaggggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatg 22908327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 48042911 - 48042838
Alignment:
Q  50 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||| ||||||||| ||||||||||||| |  |||||| || ||||||||||||||||||||||||||||||||    
T  48042911 aaaaaggggcattcagagaatcgaactccgggcctctcgcacccaaagcgagaatcataccactagaccaaatg 48042838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 48048719 - 48048645
Alignment:
Q  50 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccacta-gaccaaatg 123  Q
    |||| ||||||||||||||||| |||| || ||||||| || ||||||||||||| ||||||||| |||||||||    
T  48048719 aaaagggggcattccgagaatcaaacttgggacctctcgcacccaaagcgagaatgataccactaggaccaaatg 48048645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 29813662 - 29813717
Alignment:
Q  68 aatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||| | ||||||| || ||||||||||||||| ||||||||||||||||    
T  29813662 aatcgaactcaggacctctcgcacccaaagcgagaatcaaaccactagaccaaatg 29813717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 48054381 - 48054322
Alignment:
Q  57 ggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactaga 116  Q
    ||||||| ||||||||||||| | ||||||| || ||||||||||||||||  |||||||    
T  48054381 ggcattctgagaatcgaactcaggacctctcgcacccaaagcgagaatcatttcactaga 48054322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 49152530 - 49152603
Alignment:
Q  50 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  49152530 aaaatggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 49152603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 38393558 - 38393636
Alignment:
Q  50 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccat 128  Q
    |||| |||||||||||||||| |||||||| ||||||| || || ||||||||||||||||||||||||||||| ||||    
T  38393558 aaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 38393636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 26929298 - 26929355
Alignment:
Q  64 cgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaa 121  Q
    ||||||||||||||   ||||||| || || |||||||||||||||||||||||||||    
T  26929298 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 26929355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 6801047 - 6801127
Alignment:
Q  48 aaaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccat 128  Q
    |||||| |||||||||||||||| |||||||| ||||||| || || ||||||||||||||||||||||||||||| ||||    
T  6801047 aaaaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 6801127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 7181642 - 7181567
Alignment:
Q  48 aaaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    ||||| |||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  7181642 aaaaattggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 7181567  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 13326995 - 13327064
Alignment:
Q  54 tggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  13326995 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 13327064  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 35926120 - 35926193
Alignment:
Q  50 aaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||| |||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  35926120 aaaaaggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 35926193  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 6796568 - 6796500
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  6796568 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 6796500  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 39990651 - 39990583
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  39990651 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 39990583  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 35920134 - 35920198
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagacca 119  Q
    |||||||||||||||| ||||| || ||||||| || || |||| ||||||||||||||||||||    
T  35920134 ggggcattccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagacca 35920198  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 38930468 - 38930539
Alignment:
Q  52 aatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    ||||||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  38930468 aatggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 38930539  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 123
Target Start/End: Complemental strand, 34974880 - 34974806
Alignment:
Q  49 aaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    ||||| ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  34974880 aaaaaaggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 34974806  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 47565676 - 47565745
Alignment:
Q  54 tggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  47565676 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 47565745  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 53107710 - 53107637
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccat 128  Q
    |||||||||||||||| |||||||| ||||||| || || ||||||||||||||||||||||||||||| ||||    
T  53107710 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 53107637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 53683054 - 53682985
Alignment:
Q  54 tggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  53683054 tggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 53682985  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 31125824 - 31125756
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  31125824 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 31125756  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 23780541 - 23780472
Alignment:
Q  54 tggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    ||||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  23780541 tggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 23780472  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 43920678 - 43920605
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccat 128  Q
    |||||||||||||||| |||||||| ||||||| || || ||||||||||||||||||||||||||||| ||||    
T  43920678 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccat 43920605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 40706183 - 40706104
Alignment:
Q  49 aaaaatggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccat 128  Q
    |||||||||||||||||||||| |||||||| ||||||| || |  ||||||||||||||| ||||||||||||| ||||    
T  40706183 aaaaatggggcattccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatgcccat 40706104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 46064797 - 46064854
Alignment:
Q  64 cgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaa 121  Q
    ||||||||||||||   ||||||| || || |||||||||||||||||||||||||||    
T  46064797 cgagaatcgaactcacgacctctcgcacccgaagcgagaatcataccactagaccaaa 46064854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 992442 - 992510
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    ||||||||| ||||||||||||| | ||||||| || ||||||||||||||||||||||||||||||||    
T  992442 ggggcattcggagaatcgaactccggacctctcgcacccaaagcgagaatcataccactagaccaaatg 992510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 10754597 - 10754665
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||    
T  10754597 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 10754665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 10750280 - 10750348
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||||||||| |||||||| ||||||  || || |||||||||||||||||||||| ||||||    
T  10750280 ggggcattccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatg 10750348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 18613161 - 18613086
Alignment:
Q  53 atggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatggccat 128  Q
    ||||||||||||||||||  ||||||| ||||||| || || |||| ||||||||||||||||| |||||| ||||    
T  18613161 atggggcattccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactagatcaaatgcccat 18613086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 32678635 - 32678686
Alignment:
Q  72 gaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  32678635 gaactcaggacctctcacacccaaagcgagaatcataccactagaccaaatg 32678686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 10748684 - 10748752
Alignment:
Q  55 ggggcattccgagaatcgaactcggaacctctcacatccaaagcgagaatcataccactagaccaaatg 123  Q
    |||||||||||||||| || ||||  |||||||||| || || ||||||||||| ||||||||||||||    
T  10748684 ggggcattccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatg 10748752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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