View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18710_low_8 (Length: 359)
Name: NF18710_low_8
Description: NF18710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18710_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 2816689 - 2816883
Alignment:
| Q |
16 |
aaaagtgtatgatttaactacttggatgacactctctttcaaagatattgtgatcgtatttattgctaaataaatttctgaacacaattaactctaaatc |
115 |
Q |
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| T |
2816689 |
aaaagtgtatgatttaactacttggatgacactctctttcaaagatattgtgatcgtatttattgctaaataaatttctgaacacaattaactctaaatc |
2816788 |
T |
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| Q |
116 |
atacaaaacgtaaattttgttttcacaaatgagaagtagatgagtgaaagatggttcatagtttttgaaatcaagagattcttacagggaacact |
210 |
Q |
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| T |
2816789 |
atacaaaacgtaaattttgttttcacaaatgagaagtagatgaatgaaagatggttcatagtttttgaaatcaagagattcttacagggaacact |
2816883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 213 - 341
Target Start/End: Original strand, 2817323 - 2817451
Alignment:
| Q |
213 |
gatttaataaacatcaaacatcctccaccacctttttagatttccaagtttcaattcaatccaatgattgttgaagcaaaaatgtttaggaccccaatcc |
312 |
Q |
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| T |
2817323 |
gatttaataaacatcaaacatcctacaccacctttttagatttccaattttcaattcaatccaatgattgttgaagcaaaaatgtttaggactccaatcc |
2817422 |
T |
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| Q |
313 |
gcttcgccaacttttaggatcaaagggca |
341 |
Q |
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| T |
2817423 |
gcttcgccaacctttaggatcaaagggca |
2817451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 1423565 - 1423485
Alignment:
| Q |
49 |
ctctttcaaagatattgtgatcgtatttattgctaaataaatttctgaacacaattaactctaaatcatacaaaacgtaaa |
129 |
Q |
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| T |
1423565 |
ctctttaagagatattatgatcatatttattttaaaataaatatctgaacactattaactctaaatcatacaaaacctaaa |
1423485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 1423477 - 1423428
Alignment:
| Q |
164 |
agatggttcatagtttttgaaatcaagagattcttacagggaacacttgg |
213 |
Q |
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| T |
1423477 |
agatggttcatagtttttgaaatgatgagattcttacaggaaacacttgg |
1423428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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