View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18710_low_9 (Length: 286)

Name: NF18710_low_9
Description: NF18710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18710_low_9
NF18710_low_9
[»] chr7 (1 HSPs)
chr7 (49-286)||(27323870-27324107)
[»] chr4 (3 HSPs)
chr4 (53-286)||(28358670-28358902)
chr4 (56-130)||(43456980-43457054)
chr4 (186-286)||(43457119-43457216)
[»] chr6 (4 HSPs)
chr6 (164-286)||(3500219-3500340)
chr6 (49-162)||(3500079-3500192)
chr6 (89-127)||(29951303-29951341)
chr6 (88-128)||(5122640-5122680)
[»] chr1 (2 HSPs)
chr1 (49-149)||(33013417-33013517)
chr1 (164-228)||(33013314-33013378)
[»] chr3 (1 HSPs)
chr3 (18-46)||(48393667-48393695)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 49 - 286
Target Start/End: Original strand, 27323870 - 27324107
Alignment:
Q  49 taacaccccataatgatctagttgcaccccaaaatggccaaaatacccttattataaaattaaattttcaaaatcaaacccttgccctcataaacccttt 148  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27323870 taacaccccataatgatctagttgcaccctaaaatggcgaaaatacccatattataaaattaaattttcaaaatcaaacccttgccctcgtaaacccttt 27323969  T
Q  149 tcacgttttcttccggcttttatttctgaagaacaagaacttattataatgctttcaatgaatcaattgtagcacaaattttagttttcaaactaaagat 248  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  27323970 tcacgttttcttcctgcttttatttctgaagaacaagaacttattataacgctttcaatgaatcaattgtagcacaaattctagttttcaaacttaagat 27324069  T
Q  249 tgttttttcttgatttaatggatttgggtgcaattcta 286  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27324070 tgttttttcttgatttaatggatttgggtgcaattcta 27324107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 53 - 286
Target Start/End: Original strand, 28358670 - 28358902
Alignment:
Q  53 accccataatgatctagttgcaccccaaaatggccaaaatacccttattataaaattaaattttcaaaatcaaacccttgccctcataaacccttttcac 152  Q
    |||||||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  28358670 accccataatgatctagttgcatcctaaaatggcgaaaatacccatattataaaattaaattttcaaaatcaaacc-ttaccctcgtaaacccttttcac 28358768  T
Q  153 gttttcttccggcttttatttctgaagaacaagaacttattataatgctttcaatgaatcaattgtagcacaaattttagttttcaaactaaagattgtt 252  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  28358769 gttttcttcctgcttttatttctgaagaacaagaacttattataacgctttcaatgaatcaattgtagcacaaattctagttttcaaacttaagattgtt 28358868  T
Q  253 ttttcttgatttaatggatttgggtgcaattcta 286  Q
    ||||||||||||||||||||||||||||||||||    
T  28358869 ttttcttgatttaatggatttgggtgcaattcta 28358902  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 43456980 - 43457054
Alignment:
Q  56 ccataatgatctagttgcaccccaaaatggccaaaatacccttattataaaattaaattttcaaaatcaaaccct 130  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  43456980 ccataatgatctagttacaccctaaaatggccaaaataccattattgtaaaattaaattttcaaaatcaaaccct 43457054  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 286
Target Start/End: Original strand, 43457119 - 43457216
Alignment:
Q  186 aacttattataatgctttcaatgaatcaattgtagcacaaattttagttttcaaactaaagattgttttttcttgatttaatggatttgggtgcaattct 285  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||  |||    |||||| || ||||||||||||||| |||||||||    
T  43457119 aacttattataatgctttcaatgaatcaattgtagcacaaattctagtttgtaaacacaag---tttttttatttatttaatggatttggttgcaattct 43457215  T

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Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 164 - 286
Target Start/End: Original strand, 3500219 - 3500340
Alignment:
Q  164 gcttttatttctgaagaacaagaacttattataatgctttcaatgaatcaattgtagcacaaattttagttttcaaactaaagattgttttttcttgatt 263  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||||||||    
T  3500219 gcttttatttctgaagaacatgaacttattataacgctttcaatgaatcaattgaagcataaattttagttttcaaacttaagatt-ttttttcttgatt 3500317  T
Q  264 taatggatttgggtgcaattcta 286  Q
    |||||||||||||||||||||||    
T  3500318 taatggatttgggtgcaattcta 3500340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 3500079 - 3500192
Alignment:
Q  49 taacaccccataatgatctagttgcaccccaaaatggccaaaatacccttattataaaattaaattttcaaaatcaaacccttgccctcataaacccttt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||    
T  3500079 taacaccccataatgatctagttgcaccccaaaatggccaaaatacccttattgtaaaattaaatcttcaaaatcaaacccttgccctcgtaaacctttt 3500178  T
Q  149 tcacgttttcttcc 162  Q
    | ||||||||||||    
T  3500179 ttacgttttcttcc 3500192  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 29951303 - 29951341
Alignment:
Q  89 aaatacccttattataaaattaaattttcaaaatcaaac 127  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  29951303 aaatacccctattataaaattaaatttacaaaatcaaac 29951341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 5122680 - 5122640
Alignment:
Q  88 aaaatacccttattataaaattaaattttcaaaatcaaacc 128  Q
    |||||| || |||| ||||||||||||||||||||||||||    
T  5122680 aaaatatccctattgtaaaattaaattttcaaaatcaaacc 5122640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 149
Target Start/End: Complemental strand, 33013517 - 33013417
Alignment:
Q  49 taacaccccataatgatctagttgcaccccaaaatggccaaaatacccttattataaaattaaattttcaaaatcaaacccttgccctcataaacccttt 148  Q
    ||||||||||||||||||||||| || |  |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  33013517 taacaccccataatgatctagttacatcttaaaatggctaaaatacccttattgtgaaattaaattttcaaaatcaaacccttgccctcataaacccttt 33013418  T
Q  149 t 149  Q
    |    
T  33013417 t 33013417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 33013378 - 33013314
Alignment:
Q  164 gcttttatttctgaagaacaagaacttattataatgctttcaatgaatcaattgtagcacaaatt 228  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33013378 gcttttatttctcaagaacatgaacttattataatgctttcaatgaatcaattgtagcacaaatt 33013314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 48393667 - 48393695
Alignment:
Q  18 ggtactatttaaatccacaaccttttaaa 46  Q
    |||||||||||||||||||||||||||||    
T  48393667 ggtactatttaaatccacaaccttttaaa 48393695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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