View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18711_low_1 (Length: 660)
Name: NF18711_low_1
Description: NF18711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18711_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 584; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 8 - 591
Target Start/End: Original strand, 40894232 - 40894815
Alignment:
| Q |
8 |
agagatgaactgcactcatgcgatgattggcttcttttgagagaaccaacttttctcaccatcttttacttcacctctcatgatgaaatctttcatgcac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40894232 |
agagatgaactgcactcatgcgatgattggcttcttttgagagaaccaacttttctcaccatcttttacttcacctctcatgatgaaatctttcatgcac |
40894331 |
T |
|
| Q |
108 |
ttgactggcttcaatagaaaaacctctgctccttcctccaggcacctgcaaatcagtgagagtaaaactattaagaagcatgactagaaatattggccac |
207 |
Q |
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| T |
40894332 |
ttgactggcttcaatagaaaaacctctgctccttcctccaggcacctgcaaatcagtgagagtaaaactattaagaagcatgactagaaatattggccac |
40894431 |
T |
|
| Q |
208 |
ataaaagcataaacacttaatgcagctatcagtttttcggtaggtatcattgttctttctggttgatttcatttgcgtgcttaatttactgatgataata |
307 |
Q |
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| T |
40894432 |
ataaaagcataaacacttaatgcagctatcagtttttcggtaggtatcattgttctttctggttgatttcatttgcgtgcttaatttactgatgataata |
40894531 |
T |
|
| Q |
308 |
ataataatgtatcattgttctttctgattgatttcaaatttgagaaaatacctgagccctgatgcgtacgagtatatcatcaatggtattattgttcttt |
407 |
Q |
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| T |
40894532 |
ataataatgtatcattgttctttctgattgatttcaaatttgagaaaatacctgagccctgatgcgtacgagtatatcatcaatggtattattgttcttt |
40894631 |
T |
|
| Q |
408 |
ctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaatgtgtcgtgtgattattgatt |
507 |
Q |
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| T |
40894632 |
ctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaatgtgtcgtgtgattattgatt |
40894731 |
T |
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| Q |
508 |
cttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtggaaatcaaca |
591 |
Q |
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| T |
40894732 |
cttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtggaaatcaaca |
40894815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 392 - 588
Target Start/End: Complemental strand, 44153679 - 44153483
Alignment:
| Q |
392 |
ggtattattgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaatgtgt |
491 |
Q |
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| T |
44153679 |
ggtatttttgttttttctgatttcatttgtttcagatttaagattgtttcattatgattagttaaattcaattgagtgcttgtttagaatttgaatgtgc |
44153580 |
T |
|
| Q |
492 |
cgtgtgattattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagctctgatgagcagaagtggaaatca |
588 |
Q |
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| T |
44153579 |
cgcatgattattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctctgatgtgccgaagtggaaatca |
44153483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 392 - 588
Target Start/End: Complemental strand, 40898398 - 40898209
Alignment:
| Q |
392 |
ggtattattgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttgaatgtgt |
491 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40898398 |
ggtattattgttctttctgatttcatttgtttcggatttaagattgtttcattttgattagttcaattcaattgtgtgcttgtttagaattttaatg--- |
40898302 |
T |
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| Q |
492 |
cgtgtgattattgattcttgtaggaggaaaagacaaagaatctgaggacatttcaaccttggaggagcttagc---tctgatgagcagaagtggaaatca |
588 |
Q |
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| T |
40898301 |
-------ttattgattcatgcaggaggaaaaggcaaagaatctgaggacatttcaaccttggaggagctgagctcttctgatgtgcagaagtggaaatca |
40898209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 55 - 233
Target Start/End: Complemental strand, 44155549 - 44155367
Alignment:
| Q |
55 |
aacttttctcaccatcttttacttcacctctcatgatgaaatctttcatgcacttgac---tggc---ttcaatagaaaaacctctgctccttcctccag |
148 |
Q |
| |
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|||||| ||||||| |||| |||||||||||||||||||| ||||||| ||||||||| || | || | | ||| |||||||||||||||||| |
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| T |
44155549 |
aactttcctcaccaactttcacttcacctctcatgatgaactctttcaagcacttgacacctgacaacttgactggaa----ctctgctccttcctccag |
44155454 |
T |
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| Q |
149 |
gcacctgcaaatcag--tgagagtaaaactattaagaagcatgactagaaatattggccacataaaagcataaacacttaatgcagc |
233 |
Q |
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| T |
44155453 |
acacctgcaaatcagagtgagagtaaaactattaagaagcaggactagaaataccggccacataaaagcataaacacttaatgcagc |
44155367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 44214544 - 44214434
Alignment:
| Q |
108 |
ttgactggcttcaatagaaaaacctctgctccttcctccaggcacctgcaaatcagtgagagtaaaactattaagaagcatgactagaaatattggccac |
207 |
Q |
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||||||||||| || | |||| |||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||| ||| || ||| ||||||| |
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| T |
44214544 |
ttgactggctttaacaaaaaatcctctgctccttcctccaaacacctgcaaattagtgaaaataaaactattaagaagcaggacaggatatactggccac |
44214445 |
T |
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| Q |
208 |
ataaaagcata |
218 |
Q |
| |
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||| |||||| |
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| T |
44214444 |
ctaatagcata |
44214434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 487
Target Start/End: Complemental strand, 44154027 - 44153937
Alignment:
| Q |
386 |
atcaatggtattattgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttga |
485 |
Q |
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| T |
44154027 |
atcaaaggtattattgttctttctgattttatttg-----------acaatgtttcatcatgattagttcaattcaactgtgtgcatgtctttaatttga |
44153939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 386 - 487
Target Start/End: Complemental strand, 40898752 - 40898662
Alignment:
| Q |
386 |
atcaatggtattattgttctttctgattttatttgtttcagatttaacaatgtttcatcatgattagttcaattcaattgtgtgcttgtttagaatttga |
485 |
Q |
| |
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| T |
40898752 |
atcaaaggtattattgttctttctgattttatttg-----------acaatgtttcatcatgattagttcaattcaaccgtgtgcatgtctttaatttga |
40898664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 44214608 - 44214565
Alignment:
| Q |
59 |
tttctcaccatcttttacttcacctctcatgatgaaatctttca |
102 |
Q |
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| T |
44214608 |
tttctcgccatccttcacttcacctctcatgatgaaatctttca |
44214565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 44154841 - 44154799
Alignment:
| Q |
253 |
atcattgttctttctggttgatttcatttgcgtgcttaattta |
295 |
Q |
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||||||||||| |||| |||||||| ||||||||||||||||| |
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| T |
44154841 |
atcattgttctctctgattgatttcgtttgcgtgcttaattta |
44154799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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