View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18711_low_2 (Length: 643)
Name: NF18711_low_2
Description: NF18711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18711_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 49 - 398
Target Start/End: Complemental strand, 3904613 - 3904264
Alignment:
| Q |
49 |
ccaaatccaaccactaaatgttgaaatcaattgagattcaccccatgagatccctaatgctttttaatatgctatattttgttaagcaaaagaaattgga |
148 |
Q |
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| T |
3904613 |
ccaattccaaccactgaatgttgaaatcaattgacattcaacccatgagatccctaatgctttttaatatgctatattttgttaagcaaaagaaattgga |
3904514 |
T |
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| Q |
149 |
atgagactgcttgatactatataacacgagacgtttcgacgttccattgataaaacctaagtaactaaccaaaataaattgatatacataagcgaatata |
248 |
Q |
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| T |
3904513 |
atgagactgcttgatactatataacacgagacgtttcgacgttctattgataaaacctaagtaactaaccaaaataaattgatatacataagcgaatgta |
3904414 |
T |
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| Q |
249 |
tctaatatttacagccacataaatagaaaaccaaaataaatacacaagctgatataatgaaaatttcttagcaattctttttgaatataaatatcattta |
348 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
3904413 |
tctaatatttacagccacataaatagcaaactaaaataaatataaaagctgatataatgaaaatttattagcaattctttttaaatataaatatcattta |
3904314 |
T |
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| Q |
349 |
tttttcgaattcttaagtacaaatatctttccaatgcacatcacgattat |
398 |
Q |
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| T |
3904313 |
ttttttgaattcttaaatacaaatatctttccaatgcacatcacgattat |
3904264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 402 - 624
Target Start/End: Complemental strand, 3904107 - 3903885
Alignment:
| Q |
402 |
tataagtttgtttaaaacaggtacaggagagaaaataaaacattttcttcccatgatttattattatactttagaaataaatatcacattgcttgaacag |
501 |
Q |
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| T |
3904107 |
tataagtttgtttaaaacaggtacaagagagaaaataaaacattttcttcccataatttattattatactttagaaataaatgtcacattgcttgaacag |
3904008 |
T |
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| Q |
502 |
aaatttagtgttgatgattagctcagcagatgaattcacagaagcaagtaaatccaatgccatcagacatgcaaatcccgccaactccgttttcagattt |
601 |
Q |
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| T |
3904007 |
aaatttagtgttgatgatttgctcagcagatgaattcacagaagcaagtaaatccaatgccatcagacatgcaaatcccgccaactccattttcagattt |
3903908 |
T |
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| Q |
602 |
gatgcaatatctattacagtttt |
624 |
Q |
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| T |
3903907 |
gatgcaatatctattacagtttt |
3903885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 361 - 617
Target Start/End: Complemental strand, 3906997 - 3906729
Alignment:
| Q |
361 |
ttaagtacaaatatctttccaatgcacatcacgattatttat----ataagtttgtttaaaacaggtacaggagagaaaataaaacattttcttcccatg |
456 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| || |||||||| ||||||| ||||| ||| |
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| T |
3906997 |
ttaaatacaaatatctttcccatgcacatcacgattatttattgatataagtttgtgtaaaacaggtacaagaaagaaaatagaacatttccttcctatg |
3906898 |
T |
|
| Q |
457 |
atttattattat-------actttagaaataaatatcacattgctt-gaacagaaatttagtgttgatgattagctcagcagatgaattcacagaagcaa |
548 |
Q |
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| T |
3906897 |
atctattattatttattatactttagaaatagaaatcacattgatttgaacaaaaatttagtgttgatgatttgttcagcagatgaattcacagaagcaa |
3906798 |
T |
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| Q |
549 |
gtaaatccaatgccatcagacatgcaaatcccgccaactccgttttcagatttgatgcaatatctatta |
617 |
Q |
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| T |
3906797 |
gcaaatccaaggccatcaggcatgcaagtcccaccaactccgtgttcagagccgatgcaatatctatta |
3906729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 116 - 265
Target Start/End: Complemental strand, 3907711 - 3907561
Alignment:
| Q |
116 |
tatgctatattttgttaagcaaaagaaatt-ggaatgagactgcttgatacta-tataacacgagacgtttcgacgttccattgataaaacctaagtaac |
213 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| |||||||||||| ||||| | ||||||||||||||| ||| |||||||||||||||| |
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| T |
3907711 |
tatgctatattttgttaagcaaaaaaaatttggaatgagattgcttgatactactataaaatgagacgtttcgacgtcccaaa-ataaaacctaagtaac |
3907613 |
T |
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| Q |
214 |
taaccaaaataaattgatatacataagcgaatatatctaatatttacagcca |
265 |
Q |
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| T |
3907612 |
taacccaaataaattgatatacataagcgaatctatctaaaatttacagcca |
3907561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 3907021 - 3906983
Alignment:
| Q |
305 |
atgaaaatttcttagcaattctttttgaatataaatatc |
343 |
Q |
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|||||||||||||||||||||||||| |||| ||||||| |
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| T |
3907021 |
atgaaaatttcttagcaattctttttaaatacaaatatc |
3906983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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