View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18711_low_3 (Length: 343)

Name: NF18711_low_3
Description: NF18711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18711_low_3
NF18711_low_3
[»] chr2 (9 HSPs)
chr2 (16-333)||(42529908-42530224)
chr2 (21-112)||(39147853-39147945)
chr2 (17-113)||(44977390-44977487)
chr2 (51-111)||(15245653-15245712)
chr2 (17-65)||(18300841-18300889)
chr2 (48-87)||(4023267-4023306)
chr2 (17-67)||(33583160-33583210)
chr2 (17-65)||(1907703-1907751)
chr2 (19-63)||(2076654-2076698)
[»] chr5 (5 HSPs)
chr5 (17-113)||(6596414-6596510)
chr5 (50-112)||(35649881-35649943)
chr5 (51-112)||(15711381-15711442)
chr5 (21-73)||(20270656-20270709)
chr5 (17-73)||(20770214-20770271)
[»] chr1 (2 HSPs)
chr1 (17-63)||(10627752-10627798)
chr1 (51-111)||(50882003-50882063)
[»] chr7 (4 HSPs)
chr7 (16-113)||(39110947-39111043)
chr7 (17-119)||(48062140-48062243)
chr7 (43-118)||(2305756-2305831)
chr7 (17-113)||(31445401-31445498)
[»] chr6 (6 HSPs)
chr6 (56-115)||(958551-958610)
chr6 (17-113)||(6271433-6271527)
chr6 (17-65)||(20998085-20998133)
chr6 (17-118)||(4820450-4820552)
chr6 (17-63)||(5694093-5694139)
chr6 (17-118)||(26595432-26595534)
[»] chr4 (8 HSPs)
chr4 (21-68)||(52223268-52223315)
chr4 (17-118)||(39654907-39655009)
chr4 (21-64)||(12387606-12387649)
chr4 (17-63)||(37997337-37997383)
chr4 (17-118)||(42853660-42853762)
chr4 (17-63)||(56474709-56474755)
chr4 (17-113)||(336698-336795)
chr4 (17-73)||(28458308-28458365)
[»] chr3 (8 HSPs)
chr3 (28-113)||(30185619-30185705)
chr3 (49-113)||(44891148-44891213)
chr3 (17-63)||(13348076-13348122)
chr3 (21-63)||(24256713-24256755)
chr3 (51-111)||(21196242-21196302)
chr3 (17-65)||(35299814-35299862)
chr3 (27-63)||(44463450-44463486)
chr3 (19-63)||(50876304-50876348)
[»] chr8 (2 HSPs)
chr8 (17-63)||(5740727-5740773)
chr8 (49-118)||(32752519-32752589)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 42530224 - 42529908
Alignment:
Q  16 atctctattgttttgatttttgtatcgataccacattttctttgtaaattatgattgtttcattaattgtcattgaaactgttgttcaaataacacaatt 115  Q
    |||||||||| ||||||||||||  ||||||||||| || ||| |||||||| |||||   ||||||| ||||||||| ||||||||||||||||||| |    
T  42530224 atctctattgctttgatttttgtgacgataccacatattttttttaaattataattgtcctattaattatcattgaaattgttgttcaaataacacaact 42530125  T
Q  116 cttcaaaaaataaagaatg---aattattaaactaggacaatatatgttatcccgaccc-nnnnnnntgatagaaggattttccccccttaaaattatga 211  Q
    ||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||||||    
T  42530124 ctttaaaaaataaagaatgaataattattaaactaggacaatatatgttatcccgacccaaaacaaatgatagaaggatttttcccccttaaaattatga 42530025  T
Q  212 nnnnnnnnnnaatcctatcatgttagttttacaactcaactaaggttttgcttttgggataaatatactatgcttttattttgaagaaggataaaaatag 311  Q
              ||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  42530024 --ttttttttaatcctatcatgttagttttacaacgcaactaa-tttttgcttttgggataaatatac--tgcttttattttgaagaaggataaaaatag 42529930  T
Q  312 ggaaatgttaagaatgcctttg 333  Q
    ||||||||||||||||||||||    
T  42529929 ggaaatgttaagaatgcctttg 42529908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 39147853 - 39147945
Alignment:
Q  21 tattgttttgatttttgtatcgataccacattttctttgtaaa-ttatgattgtttcattaattgtcattgaaactgttgttcaaataacaca 112  Q
    |||||||||||||||||| || ||||| |||||| |||||||| ||||||||||  ||  | |||||||| |||  |||||||||||||||||    
T  39147853 tattgttttgatttttgtgtcaatacctcattttttttgtaaatttatgattgtcccaaaagttgtcattaaaatggttgttcaaataacaca 39147945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 44977487 - 44977390
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaa-ttatgattgtttcattaattgtcattgaaactgttgttcaaataacacaa 113  Q
    ||||||||| |||| ||||||| || ||||| ||||||||||||||| ||||| |||| |||| | || || || |||  ||||||||||||||||||    
T  44977487 tctctattgctttggtttttgtgtcaataccccattttctttgtaaatttatggttgtctcataagttttcgttcaaatggttgttcaaataacacaa 44977390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 15245712 - 15245653
Alignment:
Q  51 ttttctttgtaaattatgattgtttcattaattgtcattgaaactgttgttcaaataacac 111  Q
    ||||||||||||||||||||||| |||| | ||||||  |||| |||||||||||||||||    
T  15245712 ttttctttgtaaattatgattgtctcataagttgtca-agaaattgttgttcaaataacac 15245653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 18300841 - 18300889
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaatt 65  Q
    ||||||||||||||||||||||||  |||||  ||||||||||||||||    
T  18300841 tctctattgttttgatttttgtattaataccttattttctttgtaaatt 18300889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 4023306 - 4023267
Alignment:
Q  48 acattttctttgtaaattatgattgtttcattaattgtca 87  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  4023306 acattttctttgtaaattatgattgtctcataaattgtca 4023267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 33583210 - 33583160
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaattat 67  Q
    |||||||||||||| ||||| | || ||||| |||||||||||||||||||    
T  33583210 tctctattgttttgttttttttgtcaatacctcattttctttgtaaattat 33583160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 1907751 - 1907703
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaatt 65  Q
    |||||||||||||||||||||| || || || | |||||||||||||||    
T  1907751 tctctattgttttgatttttgtgtcaattccgctttttctttgtaaatt 1907703  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 2076654 - 2076698
Alignment:
Q  19 tctattgttttgatttttgtatcgataccacattttctttgtaaa 63  Q
    ||||||| |||||||||||| || ||||| |||||||||||||||    
T  2076654 tctattgctttgatttttgtgtcaatacctcattttctttgtaaa 2076698  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 6596414 - 6596510
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaattatgattgtttcattaattgtcattgaaactgttgttcaaataacacaa 113  Q
    ||||||||| |||| ||||||| |  ||||| ||||||||||||||||||||||| |  ||| |||||| |||||||  || |||||||||||||||    
T  6596414 tctctattgctttggtttttgtgttaatacctcattttctttgtaaattatgattatcccataaattgtaattgaaatggtcgttcaaataacacaa 6596510  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 35649943 - 35649881
Alignment:
Q  50 attttctttgtaaattatgattgtttcattaattgtcattgaaactgttgttcaaataacaca 112  Q
    |||| |||| |||||||||| |||| ||| ||||||||||||||   ||||||||||||||||    
T  35649943 atttcctttataaattatgactgttccataaattgtcattgaaatgattgttcaaataacaca 35649881  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 15711442 - 15711381
Alignment:
Q  51 ttttctttgtaaattatgattgtttcattaattgtcattgaaactgttgttcaaataacaca 112  Q
    ||||||||||||||||| |||||||||| |||||| ||  |||  ||| |||||||||||||    
T  15711442 ttttctttgtaaattataattgtttcataaattgttatataaatggttattcaaataacaca 15711381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 20270656 - 20270709
Alignment:
Q  21 tattgttttgatttttgtatcgataccacattttctttgtaaat-tatgattgt 73  Q
    |||||||||||||| ||| || ||||| |||||||||||||||| |||||||||    
T  20270656 tattgttttgatttatgtgtcaatacctcattttctttgtaaatctatgattgt 20270709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 20770214 - 20770271
Alignment:
Q  17 tctctattgttttgatttttgtatcgatacc-acattttctttgtaaattatgattgt 73  Q
    ||||||||| ||||||||| || || ||||| || |||||||||||||||||||||||    
T  20770214 tctctattgctttgattttcgtgtcaatacctactttttctttgtaaattatgattgt 20770271  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 10627798 - 10627752
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaa 63  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  10627798 tctctattgttttgatttttgtatcaataccacattttctttataaa 10627752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 50882063 - 50882003
Alignment:
Q  51 ttttctttgtaaattatgattgtttcattaattgtcattgaaactgttgttcaaataacac 111  Q
    |||||||| ||||||||||||||  ||| |||||||| | |||  ||||||||||||||||    
T  50882063 ttttctttataaattatgattgtcacataaattgtcaatcaaatggttgttcaaataacac 50882003  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 39110947 - 39111043
Alignment:
Q  16 atctctattgttttgatttttgtatcgataccacattttctttgtaaattatgattgtttcattaattgtcattgaaactgttgttcaaataacacaa 113  Q
    |||||||||| |||||||||| | || ||||  ||||||| ||||||||||||||||| |||| | |||||||| |||   |||||||||||||||||    
T  39110947 atctctattgctttgattttt-tgtcaatacttcattttcattgtaaattatgattgtctcataagttgtcattaaaataattgttcaaataacacaa 39111043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 48062140 - 48062243
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgt-aaattatgattgtttcattaattgtcattgaaactgttgttcaaataacacaatt 115  Q
    |||||||||||||| ||||||| || ||||| |||||||||| | ||||| ||||||| |||  |||| ||| | |||| | |||||||||||||||| |    
T  48062140 tctctattgttttggtttttgtgtcaatacctcattttctttataaaattttgattgtctcaaaaattatcactcaaacggatgttcaaataacacaact 48062239  T
Q  116 cttc 119  Q
    ||||    
T  48062240 cttc 48062243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 2305831 - 2305756
Alignment:
Q  43 ataccacattttctttgtaaattatgattgtttcattaattgtcattgaaactgttgttcaaataacacaattctt 118  Q
    |||||||||||| || |||||||||||||||  ||| | || | |||||||  |||||||||||||||||| ||||    
T  2305831 ataccacatttttttcgtaaattatgattgtcgcataagttattattgaaatggttgttcaaataacacaactctt 2305756  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 31445401 - 31445498
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgt-aaattatgattgtttcattaattgtcattgaaactgttgttcaaataacacaa 113  Q
    ||||||||| |||||||||||| || ||  | |||||||||||| ||||| |||||||| ||  |||| ||||  ||| || ||||||||||||||||    
T  31445401 tctctattgctttgatttttgtgtcaatcactcattttctttgtaaaattttgattgttgcaaaaattatcatataaaatgatgttcaaataacacaa 31445498  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 958610 - 958551
Alignment:
Q  56 tttgtaaattatgattgtttcattaattgtcattgaaactgttgttcaaataacacaatt 115  Q
    |||||||||||| |||||| ||| ||||||||||||||  ||||||| ||||||||||||    
T  958610 tttgtaaattataattgttacataaattgtcattgaaatggttgttcgaataacacaatt 958551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 6271433 - 6271527
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaattatgattgtttcattaattgtcattgaaactgttgttcaaataacacaa 113  Q
    |||||||||||||| ||||||| || ||| |   |||||||||||||||||||| || |||  | |||||||| |||  ||||||||||||||||||    
T  6271433 tctctattgttttggtttttgtgtcaatatct--ttttctttgtaaattatgatcgtatcaaaagttgtcattaaaatggttgttcaaataacacaa 6271527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 20998133 - 20998085
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaatt 65  Q
    ||||||||| |||| |||||||||| ||||| |||||||||||||||||    
T  20998133 tctctattgctttggtttttgtatcaatacctcattttctttgtaaatt 20998085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 4820450 - 4820552
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgt-aaattatgattgtttcattaattgtcattgaaactgttgttcaaataacacaatt 115  Q
    ||||||||| |||||||||||| || || || |||||||||||| ||||| ||||||| |||  | || ||||  |||  |||||||||||||||||| |    
T  4820450 tctctattgctttgatttttgtgtcaatgcctcattttctttgtaaaattttgattgtctcaaaagttatcatgtaaatagttgttcaaataacacaact 4820549  T
Q  116 ctt 118  Q
    |||    
T  4820550 ctt 4820552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 5694139 - 5694093
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaa 63  Q
    |||||||||||||||||||||| || ||||| ||||| |||||||||    
T  5694139 tctctattgttttgatttttgtgtcaatacctcatttcctttgtaaa 5694093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 26595432 - 26595534
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgt-aaattatgattgtttcattaattgtcattgaaactgttgttcaaataacacaatt 115  Q
    ||||||||| |||| ||||||| || ||||| |||||||||||| ||||| || ||||||||  | |||||||  |||  | |||||||||||||||| |    
T  26595432 tctctattgctttggtttttgtgtcaatacctcattttctttgtaaaattttggttgtttcaaaagttgtcatataaatggatgttcaaataacacaact 26595531  T
Q  116 ctt 118  Q
    |||    
T  26595532 ctt 26595534  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 52223268 - 52223315
Alignment:
Q  21 tattgttttgatttttgtatcgataccacattttctttgtaaattatg 68  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  52223268 tattgttttggtttttgtatcaatacctcattttctttgtaaattatg 52223315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 39654907 - 39655009
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaatt-atgattgtttcattaattgtcattgaaactgttgttcaaataacacaatt 115  Q
    ||||||||| |||||||||||| || ||||| ||||||||||||||||| ||| |||| | |  |||| ||||  |||  |||||||||||||||||| |    
T  39654907 tctctattgctttgatttttgtgtcaatacctcattttctttgtaaatttatggttgtcttaaaaattatcatctaaatagttgttcaaataacacaact 39655006  T
Q  116 ctt 118  Q
    |||    
T  39655007 ctt 39655009  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 12387649 - 12387606
Alignment:
Q  21 tattgttttgatttttgtatcgataccacattttctttgtaaat 64  Q
    |||||||||||||||||| || ||||| ||||||||||||||||    
T  12387649 tattgttttgatttttgtgtcaatacctcattttctttgtaaat 12387606  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 37997337 - 37997383
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaa 63  Q
    ||||||||| |||||||||||| || ||||| |||||||||||||||    
T  37997337 tctctattgctttgatttttgtgtcaatacctcattttctttgtaaa 37997383  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 42853660 - 42853762
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaa-ttatgattgtttcattaattgtcattgaaactgttgttcaaataacacaatt 115  Q
    ||||||||| |||| ||||||| || ||||| |||||||||| |||| || ||||||| |||  |||||||| | |||  | |||||||||||||||| |    
T  42853660 tctctattgctttggtttttgtgtcaatacctcattttctttataaaattttgattgtctcaaaaattgtcactcaaatggatgttcaaataacacaact 42853759  T
Q  116 ctt 118  Q
    |||    
T  42853760 ctt 42853762  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 56474755 - 56474709
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaa 63  Q
    |||||||||||||| ||||||| || ||||| |||||||||||||||    
T  56474755 tctctattgttttggtttttgtgtcaatacctcattttctttgtaaa 56474709  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 336795 - 336698
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaatt-atgattgtttcattaattgtcattgaaactgttgttcaaataacacaa 113  Q
    ||||||||| ||||||||||||  | ||||||| ||||||||| ||||| ||| |||| |||  | |||||||  |||  ||||||||||||||||||    
T  336795 tctctattgctttgatttttgtgccaataccactttttctttgcaaattaatggttgtatcaaaagttgtcataaaaaaagttgttcaaataacacaa 336698  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 28458365 - 28458308
Alignment:
Q  17 tctctattgttttgatttttgtatcgatacc-acattttctttgtaaattatgattgt 73  Q
    ||||||||| ||||||||| || || ||||| || |||||||||||||||||||||||    
T  28458365 tctctattgctttgattttcgtgtcaatacctactttttctttgtaaattatgattgt 28458308  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 30185619 - 30185705
Alignment:
Q  28 ttgatttttgtatcgataccacattttctttgtaaatta-tgattgtttcattaattgtcattgaaactgttgttcaaataacacaa 113  Q
    ||||||||||| || || || |||||||||||||||| | | ||||| |||| ||||||| ||||||  ||||||||||||||||||    
T  30185619 ttgatttttgtgtcaattcctcattttctttgtaaatcaataattgtctcataaattgtctttgaaatggttgttcaaataacacaa 30185705  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 44891213 - 44891148
Alignment:
Q  49 cattttctttgtaaattatgattgtttcattaatt-gtcattgaaactgttgttcaaataacacaa 113  Q
    |||||||||| |||||||||| ||| |||| | || |||||||||| |||||||||||||||||||    
T  44891213 cattttctttataaattatgagtgtctcataagtttgtcattgaaattgttgttcaaataacacaa 44891148  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 13348122 - 13348076
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaa 63  Q
    ||||||||| |||| |||||||||| ||||| |||||||||||||||    
T  13348122 tctctattgctttggtttttgtatcaatacctcattttctttgtaaa 13348076  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 24256755 - 24256713
Alignment:
Q  21 tattgttttgatttttgtatcgataccacattttctttgtaaa 63  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||    
T  24256755 tattgttttgatttttgtatcaatacctcatttcctttgtaaa 24256713  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 21196242 - 21196302
Alignment:
Q  51 ttttctttgtaaattatgattgtttcattaattgtcattgaaactgttgttcaaataacac 111  Q
    ||||||||||||||||||||| |  ||| |||||||| | |||  ||||||||||||||||    
T  21196242 ttttctttgtaaattatgattatcccataaattgtcaatcaaatggttgttcaaataacac 21196302  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 35299862 - 35299814
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaatt 65  Q
    ||||||||| |||||||||||| || ||||| |||||||||| ||||||    
T  35299862 tctctattgctttgatttttgtgtcaatacctcattttctttataaatt 35299814  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 44463450 - 44463486
Alignment:
Q  27 tttgatttttgtatcgataccacattttctttgtaaa 63  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  44463450 tttgatttttgtatcaatatcacattttctttgtaaa 44463486  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 50876348 - 50876304
Alignment:
Q  19 tctattgttttgatttttgtatcgataccacattttctttgtaaa 63  Q
    ||||||| ||||||||||||||| ||||| | |||||||||||||    
T  50876348 tctattgctttgatttttgtatcaatacctctttttctttgtaaa 50876304  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 5740773 - 5740727
Alignment:
Q  17 tctctattgttttgatttttgtatcgataccacattttctttgtaaa 63  Q
    |||||||||||||| ||||||| |||||||| | |||||||||||||    
T  5740773 tctctattgttttggtttttgtgtcgatacctctttttctttgtaaa 5740727  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 32752519 - 32752589
Alignment:
Q  49 cattttctttgtaaatta-tgattgtttcattaattgtcattgaaactgttgttcaaataacacaattctt 118  Q
    |||||||||||||||| | |||||||  ||| |||| |||||||||  |||||||||||||||||| ||||    
T  32752519 cattttctttgtaaatcaatgattgtcccataaattatcattgaaatggttgttcaaataacacaactctt 32752589  T

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