View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18711_low_4 (Length: 238)
Name: NF18711_low_4
Description: NF18711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18711_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 35889050 - 35889270
Alignment:
| Q |
18 |
acctcgagagattttaatataatagattgtatgaataatgttaagaaaacactcttttaacacttatctcaacatactcttttctattgattgaaattca |
117 |
Q |
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| T |
35889050 |
acctcgagagattttaatataatagattgtatgaataatgttaagaaaacactcttttaacacttatctcaacatactcttttctattgattgaaattaa |
35889149 |
T |
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| Q |
118 |
tatatatctcaccaaaatatataggtcctatattaacttggtggtatacatattaactttatccagataaggagaaggtgatgaaagaggtgtgtcttag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
35889150 |
tatatatctcaccaaaatatataggtcctatattaacttggtggtatacatattaactttatccagataaggagaaggtgatgaaagatgcgtgtcttag |
35889249 |
T |
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| Q |
218 |
aaaatgtgttggtggtatttc |
238 |
Q |
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||||||||||||||||||||| |
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| T |
35889250 |
aaaatgtgttggtggtatttc |
35889270 |
T |
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