View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18712_high_10 (Length: 339)
Name: NF18712_high_10
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18712_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 43651751 - 43651437
Alignment:
| Q |
18 |
ctgaggcccggggtgcgacggcctagtgcccataccggtaggggggaaaaa-tatatagaaggggacgtatatagcaagtcatgggtatatttaaggata |
116 |
Q |
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| T |
43651751 |
ctgaggcccggggtgcgacggcctagtgcccatactggtagaggaaaaaaaatatataaaaggggacgtatatagcaagtcatgggtatatttaaggata |
43651652 |
T |
|
| Q |
117 |
aatgtagcaaatctcatcaagaggcccgaacattgacagttgaaaggctaggctgaagtcttttagagaaattagctatctataccctctataaaataag |
216 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43651651 |
aatgtagcaaatctcatcgagaggcccgaacattgacagttgaaaggctaggctgaagtcttttagagaaattagctatctataccctctataaaataag |
43651552 |
T |
|
| Q |
217 |
tcttgctatatacaccctccgtataattgggnnnnnnnnccctaaaggcatagaacctataagagtgttcctaataatgtgtcaaatgcaactgatatta |
316 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43651551 |
tcttgctatatacaccctccctataattgggtttttttcccctaaaggcatagaacctataagagtgttcctaataatgtgtcaaatgcaactgatatta |
43651452 |
T |
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| Q |
317 |
aaaatcttgatgatg |
331 |
Q |
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| T |
43651451 |
aaaatcttgatgatg |
43651437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 1424363 - 1424404
Alignment:
| Q |
21 |
aggcccggggtgcgacggcctagtgcccataccggtaggggg |
62 |
Q |
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| T |
1424363 |
aggccgggggtgcgacggcctagggcccatgccggtaggggg |
1424404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 10697317 - 10697359
Alignment:
| Q |
282 |
tgttcctaataatgtgtcaaatgcaactgatattaaaaatctt |
324 |
Q |
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| T |
10697317 |
tgttcctaataatgtgtcaaatgcatctaatattaaaaatctt |
10697359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 6532888 - 6532937
Alignment:
| Q |
282 |
tgttcctaataatgtgtcaaatgcaactgatattaaaaatcttgatgatg |
331 |
Q |
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| T |
6532888 |
tgttcttaataatgtgtcaaatgcatctaatattgaaaatcttggtgatg |
6532937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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