View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18712_high_11 (Length: 324)
Name: NF18712_high_11
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18712_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 49547103 - 49546789
Alignment:
| Q |
1 |
acttttaaattttggaagtattattacacaacatagatttcacgaaaccctctttagtacaatatttttagttcccccattttgagggaattttctgttg |
100 |
Q |
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| T |
49547103 |
acttttaaattttggaagtattattacacaacatagatttcacgaaaccctctttagtacaatatttttagttcccccattttaaggggattttctgttg |
49547004 |
T |
|
| Q |
101 |
caatgaaaaacaagccccctattcaaagccattccctttcctccttttttacccaaagtcattcactcccctccaaaatcacaaacaatgcct--aagaa |
198 |
Q |
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| T |
49547003 |
caatgaaaaacaagccccctattcaaagccattccctttcctccttttttacccaaagccattcactcccctccaaaatcacaaacaatgcctaaaagaa |
49546904 |
T |
|
| Q |
199 |
taaatcatcataa-gnnnnnnncaagagactcccacattgtaatcattatgtcaggattcctcatttgtccttttcttttaacagatcctcctcctaatt |
297 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49546903 |
taaatcatcataacaaaaaaaaaaagagactcccacattgtaatcattatgtcatgattcctcatttgtctttttcttttaacagatcctcctcctaatt |
49546804 |
T |
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| Q |
298 |
cagttcatatatttt |
312 |
Q |
| |
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||| |||||| |||| |
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| T |
49546803 |
cagctcatatttttt |
49546789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 49443948 - 49443886
Alignment:
| Q |
242 |
cattatgtcaggattcctcatttgtccttttcttttaacagatcctcctcctaattcagttcat |
305 |
Q |
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|||||||| |||||||||||||| || ||||||| |||||||||||||||| |||||| |||| |
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| T |
49443948 |
cattatgttaggattcctcattt-tctttttcttccaacagatcctcctcctcattcagctcat |
49443886 |
T |
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