View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18712_high_12 (Length: 312)
Name: NF18712_high_12
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18712_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 6566565 - 6566855
Alignment:
| Q |
18 |
aaatgaagcatatgtataagattttattttggttgataggatttagagatgggattgtcattctcctcttaggtttgtgttgtgctgctagnnnnnnnnc |
117 |
Q |
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| T |
6566565 |
aaatgaagcatatgtataagattttattttggttgataggatttagagatgggattgccattctcctcttaggtttgtgttgtgctgctagaaagaaaaa |
6566664 |
T |
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| Q |
118 |
a--tggcttagcatttgattgtatcattttgtttgtaagtttgatgttgtgacgggaaccatgttaaacacgtaccgcagtcacttgtacctttgcaatt |
215 |
Q |
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| T |
6566665 |
aaatgacttagcatttgattgtatcattttgtttgtaagtttgatgttgtgacgggaaccatgttaaacacgtaccgcagtcacttgtacctttgcaatt |
6566764 |
T |
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| Q |
216 |
a-tccatcctgtgtatttgtcaactaagtgaaagaaaaatacacgattatttagcattaatgccttatcatatggataatgattcttgtcac |
306 |
Q |
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| T |
6566765 |
attccat-ctgtgtatttgtcaactaagtgaaagaaaaatacacgattatttagcattaatgccttatcatatggataatgattcttgtcac |
6566855 |
T |
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