View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18712_high_13 (Length: 306)
Name: NF18712_high_13
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18712_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 3299166 - 3299423
Alignment:
| Q |
3 |
atattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactg |
102 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3299166 |
atattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgcttgatccatttaccttgacccactg |
3299265 |
T |
|
| Q |
103 |
tttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtattaacctcaaggag |
202 |
Q |
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|
|||||||||| ||| ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3299266 |
tttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcggtattaacctcaaggag |
3299365 |
T |
|
| Q |
203 |
gaattagaggagttggtggaggagaataaagagaagaagaagctgattattgagttgt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3299366 |
gaattagaggagttggtggaggagaataaagagaagaagaagctgattattgagttgt |
3299423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 3392059 - 3392316
Alignment:
| Q |
3 |
atattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactg |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3392059 |
atattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgcttgatccatttaccttgacccactg |
3392158 |
T |
|
| Q |
103 |
tttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtattaacctcaaggag |
202 |
Q |
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|||||||||| ||| ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3392159 |
tttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcggtattaacctcaaggag |
3392258 |
T |
|
| Q |
203 |
gaattagaggagttggtggaggagaataaagagaagaagaagctgattattgagttgt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3392259 |
gaattagaggagttggtggaggagaataaagagaagaagaagctgattattgagttgt |
3392316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 1164131 - 1163942
Alignment:
| Q |
1 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1164131 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
1164032 |
T |
|
| Q |
101 |
tgtttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtatt |
190 |
Q |
| |
|
|||||||||||| ||| ||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
1164031 |
tgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcggtatt |
1163942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 1849635 - 1849823
Alignment:
| Q |
1 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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|
| T |
1849635 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatccatttaccttgacccgc |
1849734 |
T |
|
| Q |
101 |
tgtttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtat |
189 |
Q |
| |
|
|||||||||||| |||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
1849735 |
tgtttcttaaaggctgatcgttactgggatgcacccttcacgccttcattctctaggcatcagttagtggaatatgttgttctcggtat |
1849823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 38987366 - 38987548
Alignment:
| Q |
1 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
100 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38987366 |
taatgttgttgcttctttgggtccaaatattggtcctattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
38987465 |
T |
|
| Q |
101 |
tgtttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgttgttct |
183 |
Q |
| |
|
||||||||| | || ||||||||||||| ||||| ||||| | ||||||| |||| |||||||||| |||||||||||||| |
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| T |
38987466 |
tgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaatatgttgttct |
38987548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 40417956 - 40418138
Alignment:
| Q |
1 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
100 |
Q |
| |
|
|||| ||| ||||||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40417956 |
taatgttgttgcttctttcggtgaaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
40418055 |
T |
|
| Q |
101 |
tgtttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgttgttct |
183 |
Q |
| |
|
||||||||| | || ||||||||||||| ||||| ||||| | ||||||| |||| |||||||||| |||||||||||||| |
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|
| T |
40418056 |
tgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaatatgttgttct |
40418138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 39726115 - 39726261
Alignment:
| Q |
37 |
tattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcaccc |
136 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| |
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|
| T |
39726115 |
tattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacca |
39726214 |
T |
|
| Q |
137 |
ttcactccttcattctctaggcctcagttagtggaatatgttgttct |
183 |
Q |
| |
|
||||| | ||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
39726215 |
ttcacacattcattcaataggactcagttagtcgaatatgttgttct |
39726261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 39879517 - 39879663
Alignment:
| Q |
37 |
tattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcaccc |
136 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||| |
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|
| T |
39879517 |
tattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacca |
39879616 |
T |
|
| Q |
137 |
ttcactccttcattctctaggcctcagttagtggaatatgttgttct |
183 |
Q |
| |
|
||||| | ||||||| |||| |||||||||| |||||||||||||| |
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|
| T |
39879617 |
ttcacacattcattcaataggactcagttagtcgaatatgttgttct |
39879663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 39168603 - 39168770
Alignment:
| Q |
37 |
tattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgcaccc |
136 |
Q |
| |
|
||||||||| || |||||||||||||||| | ||||||| |||||||||||||||||||| | || ||||||| ||||| ||||||||||||||||| |
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|
| T |
39168603 |
tattgttatatgcactagggttgccaaaaaaattactttacttgatccatttaccttgactgctttttccttaaaggctgatgagtactggaatgcaccc |
39168702 |
T |
|
| Q |
137 |
ttcactccttcattctctaggcctcagttagtggaatatgttgttcttggtattaacctcaaggagga |
204 |
Q |
| |
|
||||| | ||||||| ||||| ||||||||||| ||||||||||||||| |||| |||| ||||||| |
|
|
| T |
39168703 |
ttcacgcattcattcactaggactcagttagtgaaatatgttgttcttgatattgtcctccaggagga |
39168770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 39399601 - 39399750
Alignment:
| Q |
37 |
tattgttatttgtactagggttgccaaaacatttact---ttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtactggaatgca |
133 |
Q |
| |
|
|||||| || || |||||||||||||||| | ||||| |||||||||||||||||||||||| | || ||||||| ||||||| |||||||||||| |
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|
| T |
39399601 |
tattgtcatatgcactagggttgccaaaaaaattactactttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgca |
39399700 |
T |
|
| Q |
134 |
cccttcactccttcattctctaggcctcagttagtggaatatgttgttct |
183 |
Q |
| |
|
|| ||||| | ||||||| |||| |||||||||| ||||| ||||||| |
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| T |
39399701 |
cctttcacgcattcattcaataggactcagttagtcaaatattttgttct |
39399750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 40596325 - 40596469
Alignment:
| Q |
25 |
aaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaagtctgatcagtac |
124 |
Q |
| |
|
||||||| |||||||| | ||||||| |||||| |||| | |||||||||||||| || ||||||| ||||| ||||||| |||||||||| |
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|
| T |
40596325 |
aaatattagtcctattatcatttgta----ggttgctaaaagaattactttgcttgatt--ttcaccttgaggtactgtatcttaaatgttgatcagtac |
40596418 |
T |
|
| Q |
125 |
tggaatgcacccttcactccttcattctctaggcctcagttagtggaatat |
175 |
Q |
| |
|
|||||||||| ||||| |||||| || ||||| |||||||||||||||| |
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|
| T |
40596419 |
tggaatgcacttttcacgccttcactcactaggagtcagttagtggaatat |
40596469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 25912712 - 25912528
Alignment:
| Q |
1 |
taatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccac |
100 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |
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|
| T |
25912712 |
taatgttgctgcttctttcagtgtaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttacttgatccatttaccttgactcat |
25912613 |
T |
|
| Q |
101 |
tgtttcttaaagtctgatcagtactggaatgcacccttcactccttcattctctaggcctcagttagtggaatatgttgttcttg |
185 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||| |||| |||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
25912612 |
tgtttcttgaaggctgatcagtactggaatgcacccttcacgccttaattcactaggcctcagttagttgaatatattgttcttg |
25912528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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