View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18712_high_16 (Length: 250)
Name: NF18712_high_16
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18712_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 65 - 247
Target Start/End: Original strand, 32045358 - 32045540
Alignment:
| Q |
65 |
gtgtgaggacccggtgccccaagtcttca-tagcaaacccgagcaaggaaacatctttccaccaacatgaaatggatcgaaagcccatagggcgcccacc |
163 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |
|
|
| T |
32045358 |
gtgtgaggacc-ggtgccccaagtcttccgtagcaaacccgagcaaggaaacatctttccaccaacatgaaatggatcgaaagcctagagggtgcccacc |
32045456 |
T |
|
| Q |
164 |
acgatgatcatgaagagatccaccaccgtatcgagctaacataacatctccccataggacctctctactgaaaataatgaggca |
247 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32045457 |
acgatgatcaagaagagatccaccaccataacgagctaacataacatctccccataagacctctctactgaaaataatgaggca |
32045540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 32045274 - 32045321
Alignment:
| Q |
16 |
atatatcctcaaaggagcattcccaagcaagaggtcattccagaagga |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32045274 |
atatatcctcaaaggagcattcccaagcaaggagtcattccagaagga |
32045321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University