View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18712_high_18 (Length: 241)

Name: NF18712_high_18
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18712_high_18
NF18712_high_18
[»] chr6 (54 HSPs)
chr6 (12-241)||(26142663-26142892)
chr6 (12-239)||(26048643-26048870)
chr6 (12-239)||(26069812-26070039)
chr6 (12-241)||(25538338-25538567)
chr6 (12-241)||(25481540-25481769)
chr6 (12-237)||(26055724-26055949)
chr6 (12-237)||(26075694-26075919)
chr6 (11-241)||(25579514-25579746)
chr6 (108-241)||(27718539-27718672)
chr6 (108-241)||(26802336-26802469)
chr6 (108-241)||(27611162-27611295)
chr6 (108-241)||(27698654-27698787)
chr6 (108-241)||(27725005-27725138)
chr6 (108-241)||(28781033-28781166)
chr6 (108-241)||(28786172-28786305)
chr6 (108-241)||(28792293-28792426)
chr6 (108-240)||(27604866-27604998)
chr6 (108-241)||(26655883-26656016)
chr6 (108-241)||(26761854-26761987)
chr6 (108-241)||(27229126-27229259)
chr6 (108-241)||(27531357-27531490)
chr6 (11-104)||(27605041-27605135)
chr6 (109-241)||(27338225-27338357)
chr6 (109-241)||(27398965-27399097)
chr6 (112-235)||(26861514-26861637)
chr6 (112-241)||(26646377-26646506)
chr6 (112-241)||(26752345-26752474)
chr6 (11-104)||(26655752-26655846)
chr6 (11-104)||(26761723-26761817)
chr6 (11-104)||(27718709-27718803)
chr6 (112-241)||(27593180-27593309)
chr6 (112-241)||(27678844-27678973)
chr6 (112-241)||(31284186-31284315)
chr6 (11-104)||(27698824-27698916)
chr6 (12-104)||(27725175-27725267)
chr6 (28-104)||(28780920-28780996)
chr6 (28-104)||(28786059-28786135)
chr6 (30-97)||(27611339-27611406)
chr6 (108-241)||(26622870-26623003)
chr6 (108-241)||(26728848-26728981)
chr6 (27-104)||(26823626-26823703)
chr6 (32-104)||(28792184-28792256)
chr6 (108-241)||(26884057-26884190)
chr6 (112-241)||(27677774-27677903)
chr6 (37-104)||(31284078-31284145)
chr6 (27-104)||(27229014-27229089)
chr6 (11-104)||(26802201-26802299)
chr6 (151-194)||(27427810-27427853)
chr6 (49-104)||(27678748-27678803)
chr6 (49-103)||(27706733-27706787)
chr6 (151-239)||(26949598-26949686)
chr6 (109-237)||(27214312-27214440)
chr6 (109-237)||(27234788-27234916)
chr6 (147-239)||(29825960-29826052)
[»] scaffold0349 (5 HSPs)
scaffold0349 (108-241)||(3582-3715)
scaffold0349 (108-241)||(14515-14648)
scaffold0349 (11-104)||(8131-8225)
scaffold0349 (11-104)||(14685-14777)
scaffold0349 (12-104)||(3752-3844)
[»] scaffold0277 (4 HSPs)
scaffold0277 (108-241)||(4831-4964)
scaffold0277 (108-241)||(13792-13925)
scaffold0277 (28-104)||(13962-14038)
scaffold0277 (32-104)||(5001-5073)
[»] scaffold1254 (2 HSPs)
scaffold1254 (108-241)||(77-210)
scaffold1254 (11-102)||(249-334)
[»] scaffold0419 (2 HSPs)
scaffold0419 (108-241)||(7419-7552)
scaffold0419 (11-102)||(7295-7380)
[»] chr4 (12 HSPs)
chr4 (108-241)||(18724232-18724365)
chr4 (108-241)||(18679714-18679847)
chr4 (34-104)||(18699717-18699787)
chr4 (108-188)||(18655677-18655757)
chr4 (34-104)||(18655794-18655864)
chr4 (34-104)||(18679884-18679954)
chr4 (34-104)||(18731821-18731891)
chr4 (108-241)||(18731651-18731784)
chr4 (108-188)||(18699600-18699680)
chr4 (151-194)||(17989244-17989287)
chr4 (151-194)||(18073702-18073745)
chr4 (76-104)||(18724402-18724430)
[»] chr1 (4 HSPs)
chr1 (108-239)||(28164511-28164642)
chr1 (158-241)||(268504-268587)
chr1 (108-227)||(28127841-28127960)
chr1 (55-100)||(28127995-28128040)
[»] chr2 (1 HSPs)
chr2 (151-239)||(17993846-17993934)
[»] scaffold0003 (1 HSPs)
scaffold0003 (151-194)||(59510-59553)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 54)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 26142663 - 26142892
Alignment:
Q  12 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  26142663 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcccgagtg 26142762  T
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  26142763 ttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgataatg 26142862  T
Q  212 atcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||||||||||||||||||||||||    
T  26142863 atcttgaaagaggagatgaaatcacaccat 26142892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 26048643 - 26048870
Alignment:
Q  12 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  26048643 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcccgagtg 26048742  T
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||    
T  26048743 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgataatg 26048842  T
Q  212 atcttgaaagaggagatgaaatcacacc 239  Q
    ||||||||||||||||||||||||||||    
T  26048843 atcttgaaagaggagatgaaatcacacc 26048870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 26069812 - 26070039
Alignment:
Q  12 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  26069812 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcccgagtg 26069911  T
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||    
T  26069912 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgataatg 26070011  T
Q  212 atcttgaaagaggagatgaaatcacacc 239  Q
    ||||||||||||||||||||||||||||    
T  26070012 atcttgaaagaggagatgaaatcacacc 26070039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 25538338 - 25538567
Alignment:
Q  12 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 111  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25538338 acagaccacacaaattaatcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttcccgagtg 25538437  T
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  25538438 ttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattagtactttcatagatgataatg 25538537  T
Q  212 atcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||||||||||||||||||||||||    
T  25538538 atcttgaaagaggagatgaaatcacaccat 25538567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 241
Target Start/End: Original strand, 25481540 - 25481769
Alignment:
Q  12 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  25481540 acagaccacacaaattactcattcatattctccattttcaaagttttttttcatccaaattctttcaattctcatggctatgcaatcaccttccagagtg 25481639  T
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||    
T  25481640 ttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgaaaatg 25481739  T
Q  212 atcttgaaagaggagatgaaatcacaccat 241  Q
    ||||| ||||||||||||||||||||||||    
T  25481740 atcttcaaagaggagatgaaatcacaccat 25481769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 26055724 - 26055949
Alignment:
Q  12 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||    
T  26055724 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttcctgagtg 26055823  T
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||| ||||    
T  26055824 ttcctcattttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaaaatg 26055923  T
Q  212 atcttgaaagaggagatgaaatcaca 237  Q
    ||||| ||||||||||||||||||||    
T  26055924 atcttcaaagaggagatgaaatcaca 26055949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 26075694 - 26075919
Alignment:
Q  12 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttctcgagtg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||    
T  26075694 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccatattctttcaattctcatggctatgcaatcaccttccagagtg 26075793  T
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||| ||||    
T  26075794 ttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaaaatg 26075893  T
Q  212 atcttgaaagaggagatgaaatcaca 237  Q
    ||||| ||||||||||||||||||||    
T  26075894 atcttcaaagaggagatgaaatcaca 26075919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 25579514 - 25579746
Alignment:
Q  11 cacagaccacacaaattactcattcatattctccattttcaaagtcttttt--tcatccaaattctttcaattctcatggctatgcaatcaccttctcga 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||| |||    
T  25579514 cacagaccacacacattactcattcatattctccattttcaaagtttttttattcatccaaattctttcaattctcatggctatgcaatcaccttcccga 25579613  T
Q  109 gtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgata 208  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||    
T  25579614 gtgttcctcagtttcagaggcagtgacactcgcaacacttttaccggtaatctctataaggctcttgttgacaagggaattcgtaccttctttgatgata 25579713  T
Q  209 atgatcttgaaagaggagatgaaatcacaccat 241  Q
    |||||||| ||||||||||||||||||||||||    
T  25579714 atgatcttcaaagaggagatgaaatcacaccat 25579746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 27718672 - 27718539
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||||||||| ||||||| |||||||||  ||| ||||||||| |||||||| |||||||||| |||||||||||| | ||| ||||| |||||     
T  27718672 agtgttcctcagttttaggggcactgacactcggcacagttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 27718573  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  27718572 aatgatcttcaaagaggagatgaaatcacaccat 27718539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 26802336 - 26802469
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||||||||| ||||||| |||||||||  ||  |||||| || |||||||| ||||||||||||||||||||||| | ||| ||||| |||||     
T  26802336 agtgttcctcagttttaggggcactgacactcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgac 26802435  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  26802436 aatgatcttcaaagaggagatgaaatcacaccat 26802469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 27611295 - 27611162
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| |||||||||||| | ||| ||||| |||||     
T  27611295 agtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 27611196  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    |||||||||  |||||||||||||||||||||||    
T  27611195 aatgatcttccaagaggagatgaaatcacaccat 27611162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 27698787 - 27698654
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||| ||||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||| | ||| ||||| |||||     
T  27698787 agtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 27698688  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  27698687 aatgatcttcaaagaggagatgaaatcacaccat 27698654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 27725138 - 27725005
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||| ||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||| | ||| ||||| |||||     
T  27725138 agtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 27725039  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  27725038 aatgatcttcaaagaggagatgaaatcacaccat 27725005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 28781033 - 28781166
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || ||||| |||||     
T  28781033 agtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 28781132  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  28781133 aatgatcttcaaagaggagatgaaatcacaccat 28781166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 28786172 - 28786305
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || ||||| |||||     
T  28786172 agtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 28786271  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  28786272 aatgatcttcaaagaggagatgaaatcacaccat 28786305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 28792293 - 28792426
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || ||||| |||||     
T  28792293 agtgttcctcagttttaggggcactgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 28792392  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  28792393 aatgatcttcaaagaggagatgaaatcacaccat 28792426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 27604998 - 27604866
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||| ||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||||| ||| ||||| |||||     
T  27604998 agtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctcttactgacaagggaattcataccttcattgatgaa 27604899  T
Q  208 aatgatcttgaaagaggagatgaaatcacacca 240  Q
    |||||||||  ||||||||||||||||||||||    
T  27604898 aatgatcttcgaagaggagatgaaatcacacca 27604866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 26655883 - 26656016
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||||||||| ||||||| |||||| ||  ||  ||||||||| |||||||| |||||||||||||| |||||||| | ||||||||| |||||     
T  26655883 agtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgac 26655982  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    |||||||||   ||||||||||||||||||||||    
T  26655983 aatgatcttctcagaggagatgaaatcacaccat 26656016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 26761854 - 26761987
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||||||||| ||||||| |||||| ||  ||  ||||||||| |||||||| |||||||||||||| |||||||| | ||||||||| |||||     
T  26761854 agtgttcctcagttttaggggcattgacacccggcacggttttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgac 26761953  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    |||||||||   ||||||||||||||||||||||    
T  26761954 aatgatcttctcagaggagatgaaatcacaccat 26761987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 27229126 - 27229259
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||| ||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||| | ||| ||||| |||||     
T  27229126 agtgttccttagttttaggggcactgacactcggcacggttttaccggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 27229225  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| |||||||||| |||||||||||||    
T  27229226 aatgatcttcaaagaggagacgaaatcacaccat 27229259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 27531490 - 27531357
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||||||||| ||||||   ||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||   ||| ||||| |||||     
T  27531490 agtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctataccttcattgatgac 27531391  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  27531390 aatgatcttcaaagaggagatgaaatcacaccat 27531357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 27605135 - 27605041
Alignment:
Q  11 cacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    ||||||||||| ||| ||||||||||||||||| |||| ||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||    
T  27605135 cacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttcatccaatttctctcaattctcatggctatgcaattaccttc 27605041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 27338357 - 27338225
Alignment:
Q  109 gtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgata 208  Q
    |||||||||||||| |||| || ||||||||   ||  ||||||||| |||||||| |||||||||||||||||||||||    || ||||| ||||| |    
T  27338357 gtgttcctcagttttagggacattgacactctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgaca 27338258  T
Q  209 atgatcttgaaagaggagatgaaatcacaccat 241  Q
    | |||||||||||||||||||||| ||||||||    
T  27338257 acgatcttgaaagaggagatgaaagcacaccat 27338225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 27399097 - 27398965
Alignment:
Q  109 gtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgata 208  Q
    |||||||||||||| |||| || ||||||||   ||  ||||||||| |||||||| |||||||||||||||||||||||    || ||||| ||||| |    
T  27399097 gtgttcctcagttttagggacattgacactctttacggttttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgaca 27398998  T
Q  209 atgatcttgaaagaggagatgaaatcacaccat 241  Q
    | |||||||||||||||||||||| ||||||||    
T  27398997 acgatcttgaaagaggagatgaaagcacaccat 27398965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 112 - 235
Target Start/End: Original strand, 26861514 - 26861637
Alignment:
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    |||||||||||||| || |||||||||||  |   |||||||||||||||||| |||||||||| ||||||||||||||  || ||||||||||||  ||    
T  26861514 ttcctcagtttcagaggaagtgacactcggtatggttttaccggtaatctctacaaggctcttactgacaagggaattcacaccttcatggatgatcgtg 26861613  T
Q  212 atcttgaaagaggagatgaaatca 235  Q
    | ||| ||||||| ||||||||||    
T  26861614 aacttcaaagaggggatgaaatca 26861637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 26646377 - 26646506
Alignment:
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    |||||||  ||||||||||||||||||||  ||  |||||| ||  ||||||| |||||||||| ||||||||||||||  || ||||| ||||||  ||    
T  26646377 ttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatgattgtg 26646476  T
Q  212 atcttgaaagaggagatgaaatcacaccat 241  Q
    ||||| | ||||||||||||||||||||||    
T  26646477 atcttaagagaggagatgaaatcacaccat 26646506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 26752345 - 26752474
Alignment:
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    |||||||  ||||||||||||||||||||  ||  |||||| ||  ||||||| |||||||||| ||||||||||||||  || ||||| ||||||  ||    
T  26752345 ttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggctcttactgacaagggaattcacaccttcattgatgattgtg 26752444  T
Q  212 atcttgaaagaggagatgaaatcacaccat 241  Q
    ||||| | ||||||||||||||||||||||    
T  26752445 atcttaagagaggagatgaaatcacaccat 26752474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 26655752 - 26655846
Alignment:
Q  11 cacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    ||||||||||| ||| ||||||||||||||||| ||||  |||| ||||||||||||||  |||| ||||||||||||||||| |||||||||||    
T  26655752 cacagaccacaaaaacttactcattcatattctgcattcccaaactcttttttcatccattttctctcaattctcatggctatacaatcaccttc 26655846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 26761723 - 26761817
Alignment:
Q  11 cacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    ||||||||||| ||| ||||||||||||||||| ||||  |||| ||||||||||||||  |||| ||||||||||||||||| |||||||||||    
T  26761723 cacagaccacaaaaacttactcattcatattctgcattcccaaactcttttttcatccattttctctcaattctcatggctatacaatcaccttc 26761817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 27718803 - 27718709
Alignment:
Q  11 cacagaccacacaaatt-actcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||| |||| ||||| ||||||||||||||| |||| ||||| ||||||||||||| | |||| ||||||||||||||||| |||||||||||    
T  27718803 cacagaacacaaaaattcactcattcatattctgcattctcaaactcttttttcatcctatttctctcaattctcatggctatacaatcaccttc 27718709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 27593309 - 27593180
Alignment:
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    |||||||||||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||||| ||||||||||||    || ||||| ||||| ||||    
T  27593309 ttcctcagtttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatg 27593210  T
Q  212 atcttgaaagaggagatgaaatcacaccat 241  Q
     |||| |||||||| |||||||||||||||    
T  27593209 gtcttcaaagaggaaatgaaatcacaccat 27593180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 27678844 - 27678973
Alignment:
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    |||||||||||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||||| ||||||||||||    || ||||| ||| | ||||    
T  27678844 ttcctcagtttcagaggaagtgacactcggtacggtttcaccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatg 27678943  T
Q  212 atcttgaaagaggagatgaaatcacaccat 241  Q
     |||| ||||||||||||||||||||||||    
T  27678944 gtcttcaaagaggagatgaaatcacaccat 27678973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 112 - 241
Target Start/End: Original strand, 31284186 - 31284315
Alignment:
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    ||||| ||||||||||| |||||||||||  |   ||| ||||| |||||||| |||||||||| |||||||||||| |  || ||||| ||||||| ||    
T  31284186 ttccttagtttcaggggaagtgacactcggtatggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagtg 31284285  T
Q  212 atcttgaaagaggagatgaaatcacaccat 241  Q
    | ||| ||||||| ||||||||||||||||    
T  31284286 aacttcaaagaggggatgaaatcacaccat 31284315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 27698916 - 27698824
Alignment:
Q  11 cacagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||| |||| || ||||||||||||||||| |||| ||||| ||||||| ||||| | |||| ||||||||||||||||| |||||||||||    
T  27698916 cacagaacacaaaatttactcattcatattctgcattctcaaactcttttt-catcctatttctctcaattctcatggctatacaatcaccttc 27698824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 27725267 - 27725175
Alignment:
Q  12 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||||||| |||||   |||||||||||| |||| ||||| ||||||||||||| | |||| |||||| |||||||||| |||||||||||    
T  27725267 acagaccacaaaaatttaccattcatattctgcattctcaaactcttttttcatcctatttctctcaattgtcatggctatacaatcaccttc 27725175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 28780920 - 28780996
Alignment:
Q  28 actcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||||||||||||  ||| ||||| ||||||||||||||| |||| |||||| ||||||||||||||| ||||||    
T  28780920 actcattcatattctgaattctcaaactcttttttcatccaatttctctcaattatcatggctatgcaattaccttc 28780996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 28786059 - 28786135
Alignment:
Q  28 actcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||||||||||||  ||| ||||| ||||||||||||||| |||| |||||||| |||||||| |||||||||||    
T  28786059 actcattcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttc 28786135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 27611406 - 27611339
Alignment:
Q  30 tcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaat 97  Q
    ||||||||||||| |||| ||||| ||||||||||||||| |||| |||||| |||||||||||||||    
T  27611406 tcattcatattctgcattctcaaactcttttttcatccaatttctctcaattttcatggctatgcaat 27611339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 26622870 - 26623003
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||| |||||||| ||||||||||||||  ||  ||| || || |||||||| |||||||||| |||||||||||| |  || ||||| ||||||    
T  26622870 agtgttcctaagtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgat 26622969  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
      ||| ||| ||||||| || ||||||| |||||    
T  26622970 cgtgaacttcaaagaggggacgaaatcaaaccat 26623003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 26728848 - 26728981
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||| |||||||| ||||||||||||||  ||  ||| || || |||||||| |||||||||| |||||||||||| |  || ||||| ||||||    
T  26728848 agtgttcctaagtttcagaggcagtgacactcggtacggtttcactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgat 26728947  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
      ||| ||| ||||||| || ||||||| |||||    
T  26728948 cgtgaacttcaaagaggggacgaaatcaaaccat 26728981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 26823626 - 26823703
Alignment:
Q  27 tactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||||||||||||| |||| ||||| ||||| ||| ||||| |||| |||||||||||||||||||| ||| ||||    
T  26823626 tactcattcatattctgcattctcaaactctttcttcgtccaatttctctcaattctcatggctatgcagtcaacttc 26823703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 28792184 - 28792256
Alignment:
Q  32 attcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||||||||  ||| ||||| ||||||||||||||| |||| |||||||| |||||||| |||||||||||    
T  28792184 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttc 28792256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 26884057 - 26884190
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    |||||||||||||||||| || |||||||||||  |   ||| || || |||||||| |||||||||| | |||||||||| |  || ||||| ||||||    
T  26884057 agtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctcttactaacaagggaatccacaccttcattgatgat 26884156  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||| |||||  |||||||   |||||||||||||    
T  26884157 aatcatcttccaagaggaagcgaaatcacaccat 26884190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 27677903 - 27677774
Alignment:
Q  112 ttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatg 211  Q
    ||||||| |||||| || |||||||||||  ||  ||| ||||| |||||||| |||||||||  |||||||||||| |  || ||||| ||  || |||    
T  27677903 ttcctcaatttcagaggaagtgacactcggtacggtttcaccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattgacaatcatg 27677804  T
Q  212 atcttgaaagaggagatgaaatcacaccat 241  Q
    | ||| ||||||| ||||||||||||||||    
T  27677803 aacttcaaagaggggatgaaatcacaccat 27677774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 31284078 - 31284145
Alignment:
Q  37 tattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||| |||| ||||| ||||| |||||||| ||||| |||| ||||||||||||||||||| ||||    
T  31284078 tattctgcattctcaaattctttcttcatccatattctctcaaatctcatggctatgcaatcatcttc 31284145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 27229014 - 27229089
Alignment:
Q  27 tactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||||||||||||| |||| | ||| ||||||  ||||||| |||| |||| |||||||||||| |||||||||||    
T  27229014 tactcattcatattctgcattctaaaactctttt--catccaatttctctcaagtctcatggctatacaatcaccttc 27229089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 26802201 - 26802299
Alignment:
Q  11 cacagaccacacaaa-ttactcattcatattctccattttcaaagtc----ttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    ||||||||||| ||| ||||||||||||||||| |||| ||||| ||    ||||||||||||| ||||  ||||| ||||||||||||| || |||||    
T  26802201 cacagaccacaaaaacttactcattcatattctgcattctcaaactcttttttttttcatccaatttctcacaattttcatggctatgcagtctccttc 26802299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 27427853 - 27427810
Alignment:
Q  151 accggtaatctctataaggctcttattgacaagggaattcgtac 194  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  27427853 accggcaatctcttgaaggctcttattgacaagggaattcgtac 27427810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 27678748 - 27678803
Alignment:
Q  49 tcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    ||||| |||||||||||| || |||| | || ||||||||||||||||||||||||    
T  27678748 tcaaactcttttttcatctaatttctctaaaatctcatggctatgcaatcaccttc 27678803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 27706787 - 27706733
Alignment:
Q  49 tcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcacctt 103  Q
    ||||| |||||||||||| || |||| | || |||||||||||||||||||||||    
T  27706787 tcaaactcttttttcatctaatttctctaaaatctcatggctatgcaatcacctt 27706733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 26949598 - 26949686
Alignment:
Q  151 accggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatgatcttgaaagaggagatgaaatcacacc 239  Q
    ||||||||||||||||| |||||   |||||||||||| || || ||||| |||||||| || ||| | | ||| || |||||||||||    
T  26949598 accggtaatctctataaagctctctctgacaagggaatccgaaccttcattgatgataaggagcttcagaaaggtgacgaaatcacacc 26949686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 237
Target Start/End: Original strand, 27214312 - 27214440
Alignment:
Q  109 gtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgata 208  Q
    |||||| | ||||||||||| |  ||||||||  ||  ||| ||||||||||||||||| ||||||  |||||| ||||| || || ||||| ||||| |    
T  27214312 gtgttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgaca 27214411  T
Q  209 atgatcttgaaagaggagatgaaatcaca 237  Q
    | || ||| | ||||| || |||||||||    
T  27214412 aggagcttcagagaggtgacgaaatcaca 27214440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 237
Target Start/End: Complemental strand, 27234916 - 27234788
Alignment:
Q  109 gtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgata 208  Q
    |||||| | ||||||||||| |  ||||||||  ||  ||| ||||||||||||||||| ||||||  |||||| ||||| || || ||||| ||||| |    
T  27234916 gtgttcattagtttcaggggtaccgacactcgacacggtttcaccggtaatctctataaagctctttgtgacaaaggaatccgaaccttcattgatgaca 27234817  T
Q  209 atgatcttgaaagaggagatgaaatcaca 237  Q
    | || ||| | ||||| || |||||||||    
T  27234816 aggagcttcagagaggtgacgaaatcaca 27234788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 29825960 - 29826052
Alignment:
Q  147 ttttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatgatcttgaaagaggagatgaaatcacacc 239  Q
    ||||||||| |||||||| || ||||| | |||||||  |||||| || ||||| ||||| || || ||| ||||||| || |||||||||||    
T  29825960 ttttaccggcaatctctacaaagctctaactgacaagaaaattcgcaccttcattgatgacaaagagcttcaaagaggggacgaaatcacacc 29826052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 3715 - 3582
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||| ||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||| | ||| ||||| |||||     
T  3715 agtgttccttagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 3616  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  3615 aatgatcttcaaagaggagatgaaatcacaccat 3582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 14648 - 14515
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||| ||||||| ||||||| |||||||||  ||  ||||||||| |||||||| |||||||||| |||||||||||| | ||| ||||| |||||     
T  14648 agtgttcatcagttttaggggcactgacactcggcacggttttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgac 14549  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  14548 aatgatcttcaaagaggagatgaaatcacaccat 14515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 8225 - 8131
Alignment:
Q  11 cacagaccacacaaatt-actcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||| |||| ||||| ||||||||||||||| |||| ||||| ||||||||||||| | |||| ||||||||||||||||| |||||||||||    
T  8225 cacagaacacaaaaattcactcattcatattctgcattctcaaactcttttttcatcctatttctctcaattctcatggctatacaatcaccttc 8131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 14777 - 14685
Alignment:
Q  11 cacagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||| |||| || ||||||||||||||||| |||| ||||| ||||||| ||||| | |||| ||||||||||||||||| |||||||||||    
T  14777 cacagaacacaaaatttactcattcatattctgcattctcaaactcttttt-catcctatttctctcaattctcatggctatacaatcaccttc 14685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 3844 - 3752
Alignment:
Q  12 acagaccacacaaattactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||||||| |||||   |||||||||||| |||| ||||| ||||||||||||| | |||| |||||| |||||||||| |||||||||||    
T  3844 acagaccacaaaaatttaccattcatattctgcattctcaaactcttttttcatcctatttctctcaattgtcatggctatacaatcaccttc 3752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 4964 - 4831
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || ||||| |||||     
T  4964 agtgttcctcagttttaggggcattgacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 4865  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  4864 aatgatcttcaaagaggagatgaaatcacaccat 4831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 13925 - 13792
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||||||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || ||||| |||||     
T  13925 agtgttcctcagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 13826  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  13825 aatgatcttcaaagaggagatgaaatcacaccat 13792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 14038 - 13962
Alignment:
Q  28 actcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||||||||||||  ||| ||||| ||||||||||||||| |||| |||||| ||||||||||||||| ||||||    
T  14038 actcattcatattctgaattctcaaactcttttttcatccaatttctctcaattatcatggctatgcaattaccttc 13962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 5073 - 5001
Alignment:
Q  32 attcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    |||||||||||  ||| ||||| ||||||||||||||| |||| |||||||| |||||||| |||||||||||    
T  5073 attcatattctgaattctcaaactcttttttcatccaatttctctcaattcttatggctatacaatcaccttc 5001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 210 - 77
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||| ||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || ||||| |||||     
T  210 agtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 111  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  110 aatgatcttcaaagaggagatgaaatcacaccat 77  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 334 - 249
Alignment:
Q  11 cacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcacct 102  Q
    ||||||||||| ||| ||||||||||||||||||       ||| |||||||||||| || |||| |||||||||||||||||||||||||||    
T  334 cacagaccacaaaaacttactcattcatattctc-------aaactcttttttcatctaatttctctcaattctcatggctatgcaatcacct 249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 7419 - 7552
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||| ||||| ||||||| |||||||||| ||  ||||||||| |||||||| |||||||||| ||||||||||||    || ||||| |||||     
T  7419 agtgttccttagttttaggggcactgacactcgccacggttttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgac 7518  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||||| ||||||||||||||||||||||||    
T  7519 aatgatcttcaaagaggagatgaaatcacaccat 7552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 7295 - 7380
Alignment:
Q  11 cacagaccacacaaa-ttactcattcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcacct 102  Q
    ||||||||||| ||| ||||||||||||||||||       ||| |||||||||||| || |||| |||||||||||||||||||||||||||    
T  7295 cacagaccacaaaaacttactcattcatattctc-------aaactcttttttcatctaatttctctcaattctcatggctatgcaatcacct 7380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 18724365 - 18724232
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    |||||||||||| |||||||||||||||||||| |||  |||||| ||| ||||||| |||||||||| |||||||||||| |  || ||||| |||||     
T  18724365 agtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctcttactgacaagggaatccacaccttcattgatgac 18724266  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
      ||| ||  ||||||| |||||||||| |||||    
T  18724265 cgtgacctgcaaagaggggatgaaatcaaaccat 18724232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 18679847 - 18679714
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    |||||||||||| |||||||||||||||||||| |||  |||||| ||| ||||||| |||||||||| |||||| ||||| |  || ||||| |||||     
T  18679847 agtgttcctcagcttcaggggcagtgacactcgtaacggttttactggtcatctctacaaggctcttactgacaaaggaatccacaccttcattgatgac 18679748  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
      ||| ||  ||||||| |||||||||| |||||    
T  18679747 cgtgacctgcaaagaggggatgaaatcaaaccat 18679714  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 18699787 - 18699717
Alignment:
Q  34 tcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    ||||||||| |||| ||||| |||||||||||| |  |||| |||||||||||||||||||||||||||||    
T  18699787 tcatattctgcattctcaaactcttttttcatctagtttctctcaattctcatggctatgcaatcaccttc 18699717  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 18655757 - 18655677
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 188  Q
    |||||||||||| |||||||||||||||||||| |||  |||||| ||  ||||||| || ||||||| ||||||||||||    
T  18655757 agtgttcctcagcttcaggggcagtgacactcgtaacggttttactgggcatctctacaaagctcttactgacaagggaat 18655677  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 18655864 - 18655794
Alignment:
Q  34 tcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    ||||||||| |||| ||||| ||||||||||||||  |||| |||||| ||||||||| ||||||||||||    
T  18655864 tcatattctgcattctcaaactcttttttcatccagtttctctcaattttcatggctaggcaatcaccttc 18655794  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 18679954 - 18679884
Alignment:
Q  34 tcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    ||||||||| |||| ||||| ||||||||||||||  |||| || ||| ||||||||||||||||||||||    
T  18679954 tcatattctgcattctcaaactcttttttcatccagtttctctctattttcatggctatgcaatcaccttc 18679884  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 18731891 - 18731821
Alignment:
Q  34 tcatattctccattttcaaagtcttttttcatccaaattctttcaattctcatggctatgcaatcaccttc 104  Q
    ||||||||| |||| ||||| ||||||||||||||  |||| || ||| ||||||||||||||||||||||    
T  18731891 tcatattctgcattctcaaactcttttttcatccagtttctctcgattttcatggctatgcaatcaccttc 18731821  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 18731784 - 18731651
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    |||||||||||| ||||||||||||||||||||  ||  |||||| ||  ||||||| |  ||||||| |||||||||||| |  || ||||| |||||     
T  18731784 agtgttcctcagcttcaggggcagtgacactcgtgacggttttactggccatctctacagagctcttactgacaagggaatccacaccttcattgatgac 18731685  T
Q  208 aatgatcttgaaagaggagatgaaatcacaccat 241  Q
      ||| ||  ||||||| |||||||||| |||||    
T  18731684 cgtgacctgcaaagaggggatgaaatcaaaccat 18731651  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 18699680 - 18699600
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaat 188  Q
    |||||||||||| |||||||||| |||||||||  ||  |||||| ||  ||||||| || ||||||| ||||||||||||    
T  18699680 agtgttcctcagcttcaggggcactgacactcgtgacggttttactggccatctctacaaagctcttactgacaagggaat 18699600  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 194
Target Start/End: Complemental strand, 17989287 - 17989244
Alignment:
Q  151 accggtaatctctataaggctcttattgacaagggaattcgtac 194  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  17989287 accggcaatctcttgaaggctcttattgacaagggaattcgtac 17989244  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 18073702 - 18073745
Alignment:
Q  151 accggtaatctctataaggctcttattgacaagggaattcgtac 194  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  18073702 accggcaatctcttgaaggctcttattgacaagggaattcgtac 18073745  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 104
Target Start/End: Complemental strand, 18724430 - 18724402
Alignment:
Q  76 tcaattctcatggctatgcaatcaccttc 104  Q
    |||||||||||||||||||||||||||||    
T  18724430 tcaattctcatggctatgcaatcaccttc 18724402  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 108 - 239
Target Start/End: Complemental strand, 28164642 - 28164511
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    ||||||||||||||| |||||||||||||||||  ||  ||| || ||  ||||||||||||| |||   |||||||||||||  || ||||| ||||||    
T  28164642 agtgttcctcagttttaggggcagtgacactcgtgacggtttcactggccatctctataaggcccttgacgacaagggaattcacacattcattgatgat 28164543  T
Q  208 aatgatcttgaaagaggagatgaaatcacacc 239  Q
      ||||||||| |||||||| |||||||||||    
T  28164542 tgtgatcttgagagaggagaagaaatcacacc 28164511  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 268587 - 268504
Alignment:
Q  158 atctctataaggctcttattgacaagggaattcgtactttcatggatgataatgatcttgaaagaggagatgaaatcacaccat 241  Q
    ||||||| |||||||||| |||||||||||| |  || ||||| ||||||  ||| ||| ||||||| |||||||||| |||||    
T  268587 atctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaaccat 268504  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 28127960 - 28127841
Alignment:
Q  108 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgat 207  Q
    |||||||||||| ||||||||||||||||||||  ||  ||| || ||  ||||||| ||||| |||  |||||||||||| |  || ||||| ||||||    
T  28127960 agtgttcctcagcttcaggggcagtgacactcgtgacggtttcactggccatctctacaaggccctttatgacaagggaatccacacattcattgatgat 28127861  T
Q  208 aatgatcttgaaagaggaga 227  Q
      | ||||||| ||||||||    
T  28127860 tgtaatcttgagagaggaga 28127841  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 28128040 - 28127995
Alignment:
Q  55 tcttttttcatccaaattctttcaattctcatggctatgcaatcac 100  Q
    |||||| |||||||| || | |||||||||||||||||||||||||    
T  28128040 tcttttctcatccaatttttgtcaattctcatggctatgcaatcac 28127995  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 17993934 - 17993846
Alignment:
Q  151 accggtaatctctataaggctcttattgacaagggaattcgtactttcatggatgataatgatcttgaaagaggagatgaaatcacacc 239  Q
    ||||||||||||||||| ||||||  ||||||||||||||| || ||||| ||||| || || ||| | ||||| ||||||||||||||    
T  17993934 accggtaatctctataaagctctttctgacaagggaattcgaaccttcatcgatgacaaagagcttcagagaggtgatgaaatcacacc 17993846  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 59510 - 59553
Alignment:
Q  151 accggtaatctctataaggctcttattgacaagggaattcgtac 194  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  59510 accggcaatctcttgaaggctcttattgacaagggaattcgtac 59553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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