View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18712_high_8 (Length: 369)
Name: NF18712_high_8
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18712_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 25617902 - 25618238
Alignment:
| Q |
16 |
aatatggcagaaatgcgctggtgccagtgtcataattccgaagcttcactctaaagtctactactttccaaaaggtcacttagaacatgcttgtacttct |
115 |
Q |
| |
|
||||||||| | ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25617902 |
aatatggcaaagatgcgctggtgccggcgtcataattccgaagcttcactctaaagtctactactttccaaaaggtcacttagaacatgcttgtacttct |
25618001 |
T |
|
| Q |
116 |
cccaacgctcacacaatcaacattattaatcgttactgtccatccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaag |
215 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25618002 |
cctaacgatcacacaatcaacattattaatcgttaccgtccatccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaag |
25618101 |
T |
|
| Q |
216 |
tcttcgccaaactgctccttactcccgtaacaaacagtttcgtccaagaatctcccaaggatactgaccaagaagataagggcgacgacaacgttgtttc |
315 |
Q |
| |
|
||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25618102 |
tcttcgccaaactgctcctcactcccgtaacagacggtttcatccaagaatctcccagggatactgaccaagaagataagggcgacgacaacgttgtttc |
25618201 |
T |
|
| Q |
316 |
ttttgtaaagattctcacaaaatctgattctaacaac |
352 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25618202 |
ttttgtgaagattctcacaaaatctgattctaacaac |
25618238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 25224820 - 25225016
Alignment:
| Q |
50 |
attccgaagcttcactctaaagtctactactttccaaaaggtcacttagaacatgcttgtacttctcccaacgctcacacaatcaacattattaatcgtt |
149 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| ||| |||||| | |||||||| ||| |||| || | ||| ||||| | |||| || |||||| |
|
|
| T |
25224820 |
attccgaagattcactctaaagtttactacttcccacgaggtcatctggaacatgcatgttcttcccctactgctgccacaagaaccattcttgatcgtt |
25224919 |
T |
|
| Q |
150 |
actgtccatccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctccttactcccgtaac |
246 |
Q |
| |
|
|| || |||||||||| |||||| |||| |||| |||||| ||| ||||||| |||| || || ||||| |||||||||||||| ||||||||||| |
|
|
| T |
25224920 |
accgttcatccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25225016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 246
Target Start/End: Original strand, 25288976 - 25289172
Alignment:
| Q |
50 |
attccgaagcttcactctaaagtctactactttccaaaaggtcacttagaacatgcttgtacttctcccaacgctcacacaatcaacattattaatcgtt |
149 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| ||| |||||| | |||||||| ||| |||| || | ||| ||||| | |||| || |||||| |
|
|
| T |
25288976 |
attccgaagattcactctaaagtttactacttcccacgaggtcatctggaacatgcatgttcttcccctactgctgccacaagaaccattcttgatcgtt |
25289075 |
T |
|
| Q |
150 |
actgtccatccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctccttactcccgtaac |
246 |
Q |
| |
|
|| || |||||||||| |||||| |||| |||| |||||| ||| ||||||| |||| || || ||||| |||||||||||||| ||||||||||| |
|
|
| T |
25289076 |
accgttcatccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25289172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 50 - 246
Target Start/End: Complemental strand, 25728428 - 25728232
Alignment:
| Q |
50 |
attccgaagcttcactctaaagtctactactttccaaaaggtcacttagaacatgcttgtacttctcccaacgctcacacaatcaacattattaatcgtt |
149 |
Q |
| |
|
||||| ||| ||||||||||||| |||||||| ||| |||||| | |||||||| ||| |||| || | ||| ||||| | |||| || |||||| |
|
|
| T |
25728428 |
attccaaagattcactctaaagtttactacttcccacgaggtcatctggaacatgcatgttcttcccctactgctgccacaagaaccattcttgatcgtt |
25728329 |
T |
|
| Q |
150 |
actgtccatccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctccttactcccgtaac |
246 |
Q |
| |
|
|| || |||||||||| |||||| |||| |||| |||||| ||| ||||||| |||| || || ||||| |||||||||||||| ||||||||||| |
|
|
| T |
25728328 |
accgttcatccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac |
25728232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 26099335 - 26099248
Alignment:
| Q |
158 |
tccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctccttactcccgtaa |
245 |
Q |
| |
|
|||||| | ||||||||||| |||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
26099335 |
tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacacagatgaagtctttgccaaactgctcctcactcccgtaa |
26099248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 231
Target Start/End: Complemental strand, 25443872 - 25443706
Alignment:
| Q |
65 |
tctaaagtctactactttccaaaaggtcacttagaacatgcttgtacttctcccaacgctcacacaatcaacattattaatcgttactgtccatccattc |
164 |
Q |
| |
|
|||||||| || ||||| ||| | |||||||| |||||||| || |||| || ||| |||| ||||||| ||||| || | || |||| ||| ||| |
|
|
| T |
25443872 |
tctaaagtttattacttcccacatggtcacttggaacatgcctgcccttcccctaaccctcaaacaatcacggttattgatggatatggtccttcctttc |
25443773 |
T |
|
| Q |
165 |
cgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgct |
231 |
Q |
| |
|
| || |||||| | |||| |||||||| ||||||||| |||| ||||| |||||||||||| |||| |
|
|
| T |
25443772 |
cttgtatcatcacagccgttgatctcctagctgatcctcacaccgatgaggtcttcgccaaattgct |
25443706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 26099434 - 26099380
Alignment:
| Q |
50 |
attccgaagcttcactctaaagtctactactttccaaaaggtcacttagaacatg |
104 |
Q |
| |
|
||||||||||| || |||||||| |||||||| ||| ||||||||||| |||||| |
|
|
| T |
26099434 |
attccgaagctacattctaaagtttactacttcccacaaggtcacttaaaacatg |
26099380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 25089770 - 25089814
Alignment:
| Q |
204 |
acactgatgaagtcttcgccaaactgctccttactcccgtaacaa |
248 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
25089770 |
acaccgatgaagtctttgcgaaactgctccttactccggtaacaa |
25089814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 25147740 - 25147784
Alignment:
| Q |
204 |
acactgatgaagtcttcgccaaactgctccttactcccgtaacaa |
248 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
25147740 |
acaccgatgaagtctttgcgaaactgctccttactccggtaacaa |
25147784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University