View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18712_low_1 (Length: 889)
Name: NF18712_low_1
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18712_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 431 - 867
Target Start/End: Complemental strand, 7089776 - 7089340
Alignment:
| Q |
431 |
aagcttggaagcacatggtgtaaggtactaaatgtgtaattactttgtcctttattttgtttttcagcctggtccaagagacaatccaattcagtgtttt |
530 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089776 |
aagcttggaagcacatggtgtaaggtactaaatgtgtaattactttgtcctttattttgtttttcagcctggtccaagagacaatccaattcagtgtttt |
7089677 |
T |
|
| Q |
531 |
atcaagagggaaagggctacttctacatatagtttatatcttggtctaagccctggtaagattgtagtgctcacatgaaattactctctatttggtaaca |
630 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089676 |
attaagagggaaagggctacttctacatatagtttatatcttggtctaagccctggtaagattgtagtgctcacatgaaattactctctatttggtaaca |
7089577 |
T |
|
| Q |
631 |
aaattttgttggaatttttgtaaaataatactaagacttctctttgaatcaaatgaagtatgtagttgttaaaaattgaattaccttcttttaggcnnnn |
730 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7089576 |
aaattttgttggaatttttttaaaataatactaagacttctctttgaatcaaatgaagtatgtagttgttaaaacttgaattaccttcttttaggctttt |
7089477 |
T |
|
| Q |
731 |
nnnngtagtattctttttcatctttctgttttccagagtaaagttacaattcaatcattaaactgttaccttatctcttattcagtccctaaagtatgga |
830 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089476 |
ttttgtagtattctttttcatctttctgttttccagagtaaacttacaattcaatcattaaactgttaccttatctcttattcagtccctaaagtatgga |
7089377 |
T |
|
| Q |
831 |
aatgtaacaaatagtctcttaactattctcaatctat |
867 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7089376 |
aatgtaacaaatagtctcttaactattctcaatctat |
7089340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 171 - 375
Target Start/End: Complemental strand, 7090031 - 7089827
Alignment:
| Q |
171 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtag |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7090031 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgtgcacttgtag |
7089932 |
T |
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| Q |
271 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
370 |
Q |
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| T |
7089931 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
7089832 |
T |
|
| Q |
371 |
ggtaa |
375 |
Q |
| |
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||||| |
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| T |
7089831 |
ggtaa |
7089827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 431 - 691
Target Start/End: Complemental strand, 7669606 - 7669346
Alignment:
| Q |
431 |
aagcttggaagcacatggtgtaaggtactaaatgtgtaattactttgtcctttattttgtttttcagcctggtccaagagacaatccaattcagtgtttt |
530 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7669606 |
aagcttggaagcacatggtgtatggtactaaatgtgttattactttgtcttttattttgtttttcagccttgtccaagagacaatccaattcagtgtttt |
7669507 |
T |
|
| Q |
531 |
atcaagagggaaagggctacttctacatatagtttatatcttggtctaagccctggtaagattgtagtgctcacatgaaattactctctatttggtaaca |
630 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
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| T |
7669506 |
atcaagagagaaagggcgacttctacatatagtttatatcttggtctaagccctggtaagattgttgtgctcacatgaaattattctctatttgataaca |
7669407 |
T |
|
| Q |
631 |
aaattttgttggaatttttgtaaaataatactaagacttctctttgaatcaaatgaagtat |
691 |
Q |
| |
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|||||||||| | |||||| |||||| | || ||| ||||||||||||||||| |||||| |
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| T |
7669406 |
aaattttgtttggatttttctaaaatcacaccaaggtttctctttgaatcaaattaagtat |
7669346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 171 - 375
Target Start/End: Complemental strand, 7669857 - 7669653
Alignment:
| Q |
171 |
cagagtcaatgggctaatttacctcccgagttactattagacataattcaaagggtggaagctagtgaaacctcttggccatctcgccgcgcacttgtag |
270 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
7669857 |
cagagtcaatgggctaacttacctcctgagttactattagacataattcaaagggtggaagctagtgaaaccacttggccatctctccgcgcacttgtag |
7669758 |
T |
|
| Q |
271 |
cttgtgcctcagtttgtagattatggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcactgaagca |
370 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7669757 |
cttgtgcctcagtttgtagattgtggagagacataacaaagggtgttgtgaagacacttgaacagtgtggttggatcactttccctatatcattgaagca |
7669658 |
T |
|
| Q |
371 |
ggtaa |
375 |
Q |
| |
|
||||| |
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| T |
7669657 |
ggtaa |
7669653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 7090193 - 7090070
Alignment:
| Q |
15 |
atgaaagagggaattggcaacatgtatagaagaggtgtagaaactaagcatatgcatagacatggaaaatctcacatagcaccagaatgttcttcaccaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7090193 |
atgaaagagggaattggcaacatgtatagaagaggtgtagaaactaagcatatgcatagacatggaaaatctcacatagcaccagaatgttcttcaccaa |
7090094 |
T |
|
| Q |
115 |
tttcactatcagtaccaacaacac |
138 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
7090093 |
tatcactatcagtaccaacaacac |
7090070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 7670011 - 7669888
Alignment:
| Q |
15 |
atgaaagagggaattggcaacatgtatagaagaggtgtagaaactaagcatatgcatagacatggaaaatctcacatagcaccagaatgttcttcaccaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||||||| || |||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7670011 |
atgaaagagggaattggcaacatgtatataagagatgtagaaaccaaacatacacatagacatggaaaatctcacatagcaccagaatgttcctcaccaa |
7669912 |
T |
|
| Q |
115 |
tttcactatcagtaccaacaacac |
138 |
Q |
| |
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| |||||||||| ||||||||||| |
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| T |
7669911 |
tatcactatcagcaccaacaacac |
7669888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 690 - 876
Target Start/End: Complemental strand, 7668888 - 7668703
Alignment:
| Q |
690 |
atgtagttgttaaaaattgaattaccttcttttaggcnnnnnnnngtagtattctttttcatctttctgttttccagagtaaagttacaattcaatcatt |
789 |
Q |
| |
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||||||||||||||| ||||| |||| ||||||||| |||||||||||||||||| |||||||||||||||| || || |||||||||| | |
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| T |
7668888 |
atgtagttgttaaaacttgaaataccctcttttagg-ttttttttgtagtattctttttcatccttctgttttccagagtgaactttcaattcaatcgct |
7668790 |
T |
|
| Q |
790 |
aaactgttaccttatctcttattcagtccctaaagtatggaaatgtaacaaatagtctcttaactattctcaatctatgaagttagt |
876 |
Q |
| |
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||||| | || || |||| |||| |||| | || || |||||||||| ||||||||| | |||||||||| ||||||||||||||| |
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| T |
7668789 |
aaactatcacattctctcctatttagtctttgaactacggaaatgtaataaatagtctataaactattctcgatctatgaagttagt |
7668703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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