View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18712_low_11 (Length: 356)
Name: NF18712_low_11
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18712_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 89 - 338
Target Start/End: Complemental strand, 930570 - 930321
Alignment:
| Q |
89 |
ttatccactcttatccaaaaatcagactttgaaataataatttagaaagatatatacaaagataaacggatttaaacaaatgttggcccctgttcgaggt |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
930570 |
ttatccactcttatccaaaaatcagactttgaaacaataatttagaaagatatatacaaagataaacggatttaaacaaatgttggcccctgttcgaggt |
930471 |
T |
|
| Q |
189 |
ggtttttgtgttatattttgaaattttcataatgtaacaacctcagatatagnnnnnnnngtcaaaattaacaagaaacataacagcagcaatattgatt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
930470 |
ggtttttgtgttatattttgaaattttcataatgtaacaacctcggatatagttttttttgtcaaaattaacaagaaacataacagcagcaatattgatt |
930371 |
T |
|
| Q |
289 |
gcacaaagctaaaaatcgtttgtggataatatgattacctgagaacaaac |
338 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
930370 |
gcacaaagctaaaaaccgtttgtggataatatgattacctgagaacaaac |
930321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 930642 - 930603
Alignment:
| Q |
10 |
acatcatcaaagattcagtttcctctactcaaaatcagaa |
49 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
930642 |
acatcatcgcagattcagtttcctctactcaaaatcagaa |
930603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University