View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18712_low_17 (Length: 277)
Name: NF18712_low_17
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18712_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 116 - 262
Target Start/End: Complemental strand, 44945908 - 44945761
Alignment:
| Q |
116 |
aaacaacgaaaacagcagcagcaggaggagcaacaccaattttctctaacattcccttatcttcctggt-gagactttcctccctgagtatctcgacaga |
214 |
Q |
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| T |
44945908 |
aaacaacgggaacagcagcagcaggaggagcaacaccaattttctctaacattcccttatcttcctggttgagactttcctccctgagtatctcgacaga |
44945809 |
T |
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| Q |
215 |
gctaaaattgcctcgtaagcattctttatgcataagcatgagtttggt |
262 |
Q |
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| T |
44945808 |
gctaaaattgccttgtaagcattctttatgcataagcatgagtttggt |
44945761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 33967348 - 33967293
Alignment:
| Q |
204 |
atctcgacagagctaaaattgcctcgtaagcattctttatgcataagcatgagttt |
259 |
Q |
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| T |
33967348 |
atcttgacagagctaaaattatcttgtaagcattcttcatgcataaccatgagttt |
33967293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 33112087 - 33112042
Alignment:
| Q |
195 |
tccctgagtatctcgacagagctaaaattgcctcgtaagcattctt |
240 |
Q |
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| T |
33112087 |
tccctgagtatcttgacagagctaaaatctccttgtaagcattctt |
33112042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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