View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18712_low_4 (Length: 605)

Name: NF18712_low_4
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18712_low_4
NF18712_low_4
[»] chr8 (14 HSPs)
chr8 (152-473)||(12231229-12231540)
chr8 (234-413)||(33327758-33327935)
chr8 (233-468)||(24801568-24801798)
chr8 (294-419)||(375661-375786)
chr8 (540-592)||(12231607-12231659)
chr8 (342-468)||(31518564-31518691)
chr8 (259-331)||(33545828-33545902)
chr8 (543-592)||(24801880-24801929)
chr8 (545-592)||(31518763-31518810)
chr8 (326-419)||(411220-411313)
chr8 (233-310)||(24800586-24800663)
chr8 (543-592)||(33328071-33328120)
chr8 (543-592)||(33546126-33546178)
chr8 (253-286)||(31518530-31518563)
[»] chr4 (19 HSPs)
chr4 (232-470)||(46611589-46611829)
chr4 (233-473)||(53019827-53020068)
chr4 (301-473)||(54349244-54349416)
chr4 (304-470)||(35802027-35802193)
chr4 (301-470)||(39163062-39163232)
chr4 (233-468)||(4947286-4947517)
chr4 (233-466)||(24777840-24778070)
chr4 (259-471)||(5555826-5556043)
chr4 (122-210)||(55441200-55441288)
chr4 (540-592)||(35802263-35802315)
chr4 (540-592)||(53020135-53020187)
chr4 (540-592)||(54349125-54349177)
chr4 (540-587)||(39163302-39163349)
chr4 (543-592)||(46611467-46611516)
chr4 (540-592)||(5556112-5556164)
chr4 (543-587)||(4947169-4947213)
chr4 (151-235)||(12569091-12569175)
chr4 (547-592)||(11087094-11087139)
chr4 (301-358)||(55441368-55441425)
[»] chr1 (13 HSPs)
chr1 (234-466)||(43043346-43043578)
chr1 (301-470)||(30786321-30786490)
chr1 (233-468)||(36729621-36729859)
chr1 (257-468)||(26049538-26049748)
chr1 (233-375)||(20062858-20063005)
chr1 (540-592)||(30786199-30786251)
chr1 (540-592)||(46886774-46886826)
chr1 (540-592)||(46888795-46888847)
chr1 (323-375)||(20059851-20059903)
chr1 (543-590)||(26049806-26049854)
chr1 (558-592)||(43043644-43043678)
chr1 (301-358)||(46887006-46887063)
chr1 (428-468)||(20062766-20062806)
[»] chr7 (4 HSPs)
chr7 (259-470)||(218650-218861)
chr7 (301-473)||(4588533-4588705)
chr7 (540-592)||(218930-218982)
chr7 (540-592)||(4588772-4588824)
[»] chr3 (14 HSPs)
chr3 (233-470)||(49020951-49021184)
chr3 (227-419)||(43543433-43543635)
chr3 (257-379)||(25484505-25484627)
chr3 (233-468)||(16467539-16467770)
chr3 (263-331)||(39944669-39944737)
chr3 (323-413)||(17767323-17767414)
chr3 (323-413)||(19068643-19068734)
chr3 (540-592)||(43543268-43543320)
chr3 (540-592)||(49020829-49020881)
chr3 (546-592)||(25482992-25483038)
chr3 (543-592)||(16467408-16467457)
chr3 (387-468)||(25483123-25483205)
chr3 (559-592)||(39944398-39944431)
chr3 (161-210)||(49237703-49237752)
[»] chr2 (17 HSPs)
chr2 (233-417)||(27613965-27614152)
chr2 (323-470)||(24573975-24574122)
chr2 (227-470)||(10377235-10377495)
chr2 (323-470)||(10375083-10375230)
chr2 (233-468)||(22615564-22615795)
chr2 (233-468)||(36561737-36561982)
chr2 (234-331)||(24574162-24574259)
chr2 (219-310)||(10374655-10374746)
chr2 (261-473)||(19258961-19259164)
chr2 (540-592)||(10375303-10375355)
chr2 (540-592)||(10377565-10377617)
chr2 (540-592)||(19258842-19258894)
chr2 (540-592)||(24573853-24573905)
chr2 (540-592)||(27613801-27613853)
chr2 (543-592)||(22615877-22615926)
chr2 (543-592)||(37509849-37509898)
chr2 (540-592)||(36562054-36562106)
[»] scaffold0316 (3 HSPs)
scaffold0316 (301-473)||(10762-10934)
scaffold0316 (92-210)||(11014-11132)
scaffold0316 (540-592)||(10643-10695)
[»] chr6 (2 HSPs)
chr6 (233-358)||(241097-241222)
chr6 (543-592)||(241414-241463)
[»] chr5 (10 HSPs)
chr5 (92-210)||(20506984-20507102)
chr5 (233-331)||(7014787-7014885)
chr5 (540-592)||(31813648-31813700)
chr5 (323-473)||(7014325-7014471)
chr5 (543-592)||(7014199-7014248)
chr5 (323-375)||(19281968-19282020)
chr5 (260-310)||(1494760-1494810)
chr5 (363-419)||(1494824-1494880)
chr5 (301-358)||(21947189-21947246)
chr5 (301-358)||(31813410-31813467)
[»] scaffold0007 (2 HSPs)
scaffold0007 (316-466)||(197972-198122)
scaffold0007 (323-466)||(198566-198709)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 5e-82; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 152 - 473
Target Start/End: Original strand, 12231229 - 12231540
Alignment:
Q  152 tcaacgtgaacatggtggtaataataatattaaagcaaggtcgaacatgcggtgacaaataagaccgaagtgctttgaagattattttctagtgtcttta 251  Q
    |||||||| |||||||  |  ||| |||| ||| |||| |||||| ||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||      
T  12231229 tcaacgtggacatggtacttgtaacaataataaggcaaagtcgaatatgcggtgacaaacaagactgaagtgcattgaagattatttcctagtgtctt-- 12231326  T
Q  252 gaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatcggtttgtaataataacaat 351  Q
            |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12231327 --------aggaagttatttctactttcaatatagactgtaggatttagtgttagttttctctacaaggtctatatatatcagtttgtaataataacaat 12231418  T
Q  352 gggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtatggagcgacagattccatccaccctttaca 451  Q
    |||||||||||||||||| |||||||||  ||| |||||||||||||||||||||||||||| ||||| |  ||  ||||||||||  ||||||||||||    
T  12231419 gggttggtttcttgatttttgaaaactctgtaacacccacgccatgggagcaaacgggttcaggagtggagagattgacagattccgaccaccctttaca 12231518  T
Q  452 ttcctgcaatttaatatcaatg 473  Q
    |||||  ||||||||| |||||    
T  12231519 ttcctataatttaataccaatg 12231540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 234 - 413
Target Start/End: Original strand, 33327758 - 33327935
Alignment:
Q  234 tattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatcg 333  Q
    ||||||||| |||| |  |||||||||||||||||||| |||||||||||||||  |||| ||||||||||||||||||||||||||| |||||||  |     
T  33327758 tattttctaatgtcatgggaagttataggaagttatttctacttttaatatagatcgtagtatttagtggtagttttctctacaaggtttatatat--ca 33327855  T
Q  334 gtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttca 413  Q
    ||||||||||||||||||||||||||||||||||||||||| |||   ||| ||||||||||||||||||||| ||||||    
T  33327856 gtttgtaataataacaatgggttggtttcttgatttctgaagactttgtaacacccacgccatgggagcaaacaggttca 33327935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 233 - 468
Target Start/End: Original strand, 24801568 - 24801798
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatc 332  Q
    ||||||||||||||  |  ||||||||| |||||||||| || ||||||| ||||| |||||||||||||||||||||  ||||||||||||||||||||    
T  24801568 ttattttctagtgttctaggaagttataagaagttatttatatttttaatctagaccgtaggatttagtggtagtttttcctacaaggtctatatatatc 24801667  T
Q  333 ggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatg-ggagcaaacgggttcatgagtgtatggagcgaca 431  Q
     ||||||||||| || || ||||| ||||||||||||||| ||||||  ||| |||| |||  || | |||| |  |||||| ||||| || || |||||    
T  24801668 agtttgtaataagaaaaaggggtt-gtttcttgatttctg-aaactc--taacacccccgc--tgcgaagcatataggttcacgagtggatagatcgaca 24801761  T
Q  432 gattccatccaccctttacattcctgcaatttaatat 468  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  24801762 gattccaaccaccctttacattcctgaaatttaatat 24801798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 294 - 419
Target Start/End: Original strand, 375661 - 375786
Alignment:
Q  294 gatttagtggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgc 393  Q
    |||||| ||||||||||  |||||||||||||||||||  ||||||||||| ||||| || ||| |||||||||||||||||||||  ||| ||||||||    
T  375661 gatttaatggtagtttttcctacaaggtctatatatatgagtttgtaataagaacaagggattgttttcttgatttctgaaaactctctaacacccacgc 375760  T
Q  394 catgggagcaaacgggttcatgagtg 419  Q
    |||||||| |||| |||||| |||||    
T  375761 catgggagaaaacaggttcaggagtg 375786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 12231607 - 12231659
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12231607 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 12231659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 342 - 468
Target Start/End: Original strand, 31518564 - 31518691
Alignment:
Q  342 taataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtatggagcgacagattccatcc 441  Q
    |||||||||| ||||  ||||||||||||| |||||||   || | |||||||||| ||||||||||||||| ||||| || ||  ||||||||||| ||    
T  31518564 taataacaattggttaatttcttgatttctcaaaactctgcaacatccacgccatgagagcaaacgggttcaggagtggatagattgacagattccaacc 31518663  T
Q  442 accctttacatt-cctgcaatttaatat 468  Q
    | |||||| ||| |||| ||||||||||    
T  31518664 aacctttaaattccctgaaatttaatat 31518691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 33545828 - 33545902
Alignment:
Q  259 taggaagttatttttacttttaatatagactgtaggatttagtggtag--ttttctctacaaggtctatatatat 331  Q
    ||||||||||||| ||||||||||||| || |||||||||||||||||  |||| |||||||| |||||||||||    
T  33545828 taggaagttatttctacttttaatataaaccgtaggatttagtggtagttttttttctacaagatctatatatat 33545902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 24801880 - 24801929
Alignment:
Q  543 atgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  24801880 atgctcacttgagcatttttctatcatgttgtcattagacaacttgttat 24801929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 545 - 592
Target Start/End: Original strand, 31518763 - 31518810
Alignment:
Q  545 gctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  31518763 gctcacttgagcatttttctatcatgttgtcatgagacaacttattat 31518810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 326 - 419
Target Start/End: Original strand, 411220 - 411313
Alignment:
Q  326 atatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtg 419  Q
    ||||||| ||||||||||| ||||| |||| |  | |||||||||||||| |||  ||| ||||| ||||||||||||||| |||| |||||||    
T  411220 atatatcagtttgtaataagaacaaagggtggaatccttgatttctgaaatctcggtaacacccaggccatgggagcaaactggttaatgagtg 411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 24800586 - 24800663
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagtttt 310  Q
    ||||||| |||||||||  ||||||||| |||||||||| || ||| ||| ||||| |||| ||||||||||||||||    
T  24800586 ttattttatagtgtcttaggaagttataagaagttatttctattttaaatctagaccgtagaatttagtggtagtttt 24800663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 33328071 - 33328120
Alignment:
Q  543 atgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||||||||  |||||||| |||||||||||||| ||||||||||    
T  33328071 atgctcacttgagcgtttttctattatgttgtcatgagaaaacttgttat 33328120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 33546126 - 33546178
Alignment:
Q  543 atgctcacttgagcaatttt---ctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||||||||| ||||   |||| |||||||||||||||||||||||||    
T  33546126 atgctcacttgagcattttttttctattatgttgtcatgagacaacttgttat 33546178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 31518530 - 31518563
Alignment:
Q  253 aagttataggaagttatttttacttttaatatag 286  Q
    ||||||||||||||||||| ||||||||||||||    
T  31518530 aagttataggaagttatttctacttttaatatag 31518563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 232 - 470
Target Start/End: Complemental strand, 46611829 - 46611589
Alignment:
Q  232 attattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaagg--tctatatat 329  Q
    ||||||| ||||||||||  |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||  | |||||||    
T  46611829 attatttcctagtgtcttaggaagttataggaagttatttctacttttaatatagaccgtaggatttagtggtagttttctctacaaggcctatatatat 46611730  T
Q  330 atcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtatggagcga 429  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||||  ||| |||||  ||||||||||||||||||| | ||||| |  ||  ||    
T  46611729 atcagtttgtaataataacaattggttggtttcttgatttctgaaaactctgtaacacccattccatgggagcaaacgggtttaggagtggagagattga 46611630  T
Q  430 cagattccatccaccctttacattcctgcaatttaatatca 470  Q
    ||||||||  |||||||||| |||||| |||||||||||||    
T  46611629 cagattccgaccaccctttatattcctacaatttaatatca 46611589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 233 - 473
Target Start/End: Original strand, 53019827 - 53020068
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatc 332  Q
    |||||||||||||||||  |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  53019827 ttattttctagtgtcttgggaagttataggaagttatttctacttttaatatagaccgtaggatttagtgatagttttctctacaaggtctatatatatc 53019926  T
Q  333 ggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataataccc-acgcca-tgggagcaaacgggttcatgagtgtatggagcgac 430  Q
     ||||||||||||||||| ||||||||||||||||| ||| |||||| | ||  |||  |||||    ||||| | ||||| |||||||||||||  |||    
T  53019927 agtttgtaataataacaaggggttggtttcttgattcctg-aaactcgaaaacccccgccgccacatagagcatatgggtttatgagtgtatggattgac 53020025  T
Q  431 agattccatccaccctttacattcctgcaatttaatatcaatg 473  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  53020026 agattccaaccaccctttacattcctgcaatttaatatcaatg 53020068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 301 - 473
Target Start/End: Complemental strand, 54349416 - 54349244
Alignment:
Q  301 tggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatggga 400  Q
    |||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  54349416 tggtagttttttctataaggtctatatatatcagtttgtaataataacaatgggttggtttcttgatttctgaaaactctgtaacacccacgccatggga 54349317  T
Q  401 gcaaacgggttcatgagtgtatggagcgacagattccatccaccctttacattcctgcaatttaatatcaatg 473  Q
    ||||||||||||| ||||| |  ||  ||||||||||  ||||||||||||||||| ||||||||||||||||    
T  54349316 gcaaacgggttcaggagtggagagattgacagattccgaccaccctttacattcctacaatttaatatcaatg 54349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 304 - 470
Target Start/End: Original strand, 35802027 - 35802193
Alignment:
Q  304 tagttttctctacaaggtctatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagca 403  Q
    ||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||  ||| ||||||||||| ||||||    
T  35802027 tagttttttctacaaagtctatatatatcagtttgtaatgataacaatgggttgatttcttgatttctgaaaactctgtaacacccacgccataggagca 35802126  T
Q  404 aacgggttcatgagtgtatggagcgacagattccatccaccctttacattcctgcaatttaatatca 470  Q
    ||||||| || ||||| |  ||  ||||||||||  ||||||||||||||||| |||||||||||||    
T  35802127 aacgggtccaggagtggagagattgacagattccgaccaccctttacattcctacaatttaatatca 35802193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 301 - 470
Target Start/End: Original strand, 39163062 - 39163232
Alignment:
Q  301 tggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgg-gttggtttcttgatttctgaaaactcaataatacccacgccatggg 399  Q
    |||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||  ||| ||||||||||||||    
T  39163062 tggtagttttttctacaaagtctatatatatcagtttgtaataataacaatggtgttggtttcttgatttctaaaaactctgtaacacccacgccatggg 39163161  T
Q  400 agcaaacgggttcatgagtgtatggagcgacagattccatccaccctttacattcctgcaatttaatatca 470  Q
    ||||||||||| || ||||| |  ||  || |||||||  ||||||||||||||||| |||||||||||||    
T  39163162 agcaaacgggtccaggagtggagagattgatagattccgaccaccctttacattcctacaatttaatatca 39163232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 233 - 468
Target Start/End: Complemental strand, 4947517 - 4947286
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatc 332  Q
    |||||||||| ||||||  ||||||||| |||||||||| || ||||||| ||||| |||||||||||||||||||||  ||||||||||| ||||||||    
T  4947517 ttattttctaatgtcttaggaagttataagaagttatttctatttttaatctagaccgtaggatttagtggtagtttttcctacaaggtctgtatatatc 4947418  T
Q  333 ggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtatggagcgacag 432  Q
     ||||||||||| ||||| ||||| ||||||| ||||||| ||||||  ||| |||| | ||   |||||| | ||||||| ||||| || || ||||||    
T  4947417 agtttgtaataagaacaaggggtttgtttctttatttctg-aaactc--taacaccccctcc-gcggagcatatgggttcacgagtggatagatcgacag 4947322  T
Q  433 attccatccaccctttacattcctgcaatttaatat 468  Q
    |||||| ||||| ||||||||| |||||||||||||    
T  4947321 attccaaccaccttttacattcatgcaatttaatat 4947286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 233 - 466
Target Start/End: Complemental strand, 24778070 - 24777840
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggta-gttttctctacaaggtctatatatat 331  Q
    |||||||||||||||||  ||||||||| |||||||||| || ||||||| ||||| |||||||||||||||| |||||| ||||||||||||| |||||    
T  24778070 ttattttctagtgtcttaggaagttataagaagttatttctatttttaatctagaccgtaggatttagtggtaagttttc-ctacaaggtctatgtatat 24777972  T
Q  332 cggtttgtaataataacaatgggttgg-tttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtatggagcgac 430  Q
    | ||||||||||| ||||| ||||||| |||||||||||||  ||||||  ||| |||| | |||  |||||||| || |||| ||||| |||||  ||     
T  24777971 cagtttgtaataagaacaaggggttggttttcttgatttct-taaactc--taacacccccacca-cggagcaaatggcttcacgagtgcatggattgat 24777876  T
Q  431 agattccatccaccctttacattcctgcaatttaat 466  Q
    |||||||| |||||||||||||||||||||||||||    
T  24777875 agattccaaccaccctttacattcctgcaatttaat 24777840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 259 - 471
Target Start/End: Original strand, 5555826 - 5556043
Alignment:
Q  259 taggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatcggttt----gtaataataacaatggg 354  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||   | |    |||||||||||||| ||    
T  5555826 taggaagttatttctactttcaatatagactgtaggatttagtggtagttttctctacaaagtctatatatatatatatatatgtaataataacaattgg 5555925  T
Q  355 ttggtttcttgatttctgaaaactcaataatacccacgcca-tgggagcaaacgggttcatgagtgtatggagcgacagattccatccaccctttacatt 453  Q
    |||||||||||||||  ||||   ||| |    |  |||||    ||||| | | ||||| |||||||||||  ||||||||||| ||||||||||||||    
T  5555926 ttggtttcttgattttcgaaactccaacaccctcgccgccacacagagcatatgtgttcacgagtgtatggattgacagattccaaccaccctttacatt 5556025  T
Q  454 cctgcaatttaatatcaa 471  Q
    ||||||||||||||||||    
T  5556026 cctgcaatttaatatcaa 5556043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 55441200 - 55441288
Alignment:
Q  122 ctaaaatctattattatgtcctggagtatttcaacgtgaacatggtggtaataataatattaaagcaaggtcgaacatgcggtgacaaa 210  Q
    ||||| |||||||||||| |  |||||||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||    
T  55441200 ctaaattctattattatgactaggagtatttcaacgtgaaaatggtggcaataataatattaaggcaaagtcgaacatgcggtgacaaa 55441288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 35802263 - 35802315
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35802263 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 35802315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 53020135 - 53020187
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53020135 aacatgctcgcttgagcaattttctatcatgttgtcatgagacaacttgttat 53020187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 54349177 - 54349125
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54349177 aacatgctcacttgggcaattttctatcatgttgtcatgagacaacttgttat 54349125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 540 - 587
Target Start/End: Original strand, 39163302 - 39163349
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaactt 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39163302 aacatgctcacttgagcaattttctatcatgttgtcatgagacaactt 39163349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 46611516 - 46611467
Alignment:
Q  543 atgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46611516 atgctcacttgagcaattttctatcatgttgtcacgagacaacttgttat 46611467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 5556112 - 5556164
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  5556112 aacatgcttacttgagcaattttctatcacgttgtcatgagacaacttgttat 5556164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 543 - 587
Target Start/End: Complemental strand, 4947213 - 4947169
Alignment:
Q  543 atgctcacttgagcaattttctatcatgttgtcatgagacaactt 587  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  4947213 atgctcacttgagcatttttctatcatgttgtcatgagacaactt 4947169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 12569175 - 12569091
Alignment:
Q  151 ttcaacgtgaacatggtggtaataataatattaaagcaaggtcgaacatgcggtgacaaataagaccgaagtgctttgaagatta 235  Q
    ||||||||| |||||||| || ||| |||| ||| |||| |||||||||||||||||||| |||   ||||||| ||||||||||    
T  12569175 ttcaacgtggacatggtgctagtaacaataataaggcaaagtcgaacatgcggtgacaaacaaggttgaagtgcattgaagatta 12569091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 592
Target Start/End: Complemental strand, 11087139 - 11087094
Alignment:
Q  547 tcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||  ||||||| |||||||||||||| ||||||||||    
T  11087139 tcacttgagcatctttctattatgttgtcatgagaaaacttgttat 11087094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 55441368 - 55441425
Alignment:
Q  301 tggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggttgg 358  Q
    |||||||||| ||| ||| ||||||||||||| ||||||||||| || || |||||||    
T  55441368 tggtagttttttctgcaaagtctatatatatcagtttgtaataagaagaaagggttgg 55441425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 5e-67; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 234 - 466
Target Start/End: Original strand, 43043346 - 43043578
Alignment:
Q  234 tattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatcg 333  Q
    ||||||||||||||||  |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  43043346 tattttctagtgtcttaggaagttatagaaagttatttttacttttaatatagaccgtaggatttagtggtagttttctctacaaggtctatatatatca 43043445  T
Q  334 gtttgtaataataacaatgggttggtttcttgatttctgaaaactcaata-atacccacgccatgggagcaaacgggttcatgagtgtatggagcgacag 432  Q
    |||||||||||| |||||||||||||||||||||||||||||   ||| |    ||| || |||  ||||| | |||||||||||||||||||  | |||    
T  43043446 gtttgtaataattacaatgggttggtttcttgatttctgaaactccaacaccctccctcgtcat-agagcatatgggttcatgagtgtatggattggcag 43043544  T
Q  433 attccatccaccctttacattcctgcaatttaat 466  Q
    |||||| |||||||||||||||||||||||||||    
T  43043545 attccaaccaccctttacattcctgcaatttaat 43043578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 301 - 470
Target Start/End: Complemental strand, 30786490 - 30786321
Alignment:
Q  301 tggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatggga 400  Q
    |||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  30786490 tggtagttttttcttcaaagtctatatatatcagtttgtaataataacaatgggttggtttcttgatttctgaaaactctgtaacacccacgccatggga 30786391  T
Q  401 gcaaacgggttcatgagtgtatggagcgacagattccatccaccctttacattcctgcaatttaatatca 470  Q
    ||||||||||||| ||||| |  ||  ||||||||||  |||||||||| |||||| |||||||||||||    
T  30786390 gcaaacgggttcaagagtggagagattgacagattccgaccaccctttaaattcctacaatttaatatca 30786321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 233 - 468
Target Start/End: Original strand, 36729621 - 36729859
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatc 332  Q
    |||||||||||||| ||  |||||||||||||||||||| |||||||||| || || |||||||||| | ||||||||  |||||||||||||||||||     
T  36729621 ttattttctagtgttttaggaagttataggaagttatttctacttttaatttaaaccgtaggatttaattgtagtttttcctacaaggtctatatatatg 36729720  T
Q  333 ggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtatggagcgacag 432  Q
     ||||||||||| |||||   |||||||||||||||| |||||||| | ||| |||||| |||||||||| |||||||||| || || |  ||  |||||    
T  36729721 agtttgtaataagaacaaaatgttggtttcttgatttttgaaaacttagtaacacccacaccatgggagccaacgggttcaggattggacagattgacag 36729820  T
Q  433 attccatccaccctttacattcc---tgcaatttaatat 468  Q
    |||||| ||||||||||||||||   |||||||||||||    
T  36729821 attccagccaccctttacattccatgtgcaatttaatat 36729859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 257 - 468
Target Start/End: Original strand, 26049538 - 26049748
Alignment:
Q  257 tataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggtt 356  Q
    ||||||||||||||| |||||||||| ||||| ||| ||||||||||||||||| |||||||||||  |||||||| ||||||||||| || |   || |    
T  26049538 tataggaagttatttctacttttaatttagaccgtatgatttagtggtagttttttctacaaggtc--tatatatcagtttgtaataagaagagatggct 26049635  T
Q  357 ggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtatggagcgacagattccatccaccctttacattcc- 455  Q
    |||||| |||||||| ||||||   ||| |||||||||| |||||||||| |||||| ||||| |  |   |||||||| || | || |||||||||||     
T  26049636 ggtttcatgatttctaaaaactttgtaacacccacgccaagggagcaaacaggttcaggagtggacaggttgacagatttcaacaactctttacattcca 26049735  T
Q  456 tgcaatttaatat 468  Q
    |||||||||||||    
T  26049736 tgcaatttaatat 26049748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 233 - 375
Target Start/End: Complemental strand, 20063005 - 20062858
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtc------tata 326  Q
    |||||||||| ||||||  |||||||||||||||| ||| |||||||||| |||||| |||||||||||||||| ||| |||||||||||      ||||    
T  20063005 ttattttctactgtcttaggaagttataggaagttgtttctacttttaatttagactctaggatttagtggtaggttt-tctacaaggtctatatatata 20062907  T
Q  327 tatatcggtttgtaataataacaatgggttggtttcttgatttctgaaa 375  Q
    |||||| |||||||||||||| ||  ||||||||||||||||| |||||    
T  20062906 tatatcagtttgtaataataataaatggttggtttcttgatttatgaaa 20062858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 30786251 - 30786199
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  30786251 aacatgctcacttgagcaattttctataatgttgtcatgagacaatttgttat 30786199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 46886826 - 46886774
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  46886826 aacatgcttacttgagcaattttctatcttgttgtcatgagacaacttgttat 46886774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 46888847 - 46888795
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  46888847 aacatgcttacttgagcaattttctatcttgttgtcatgagacaacttgttat 46888795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 20059903 - 20059851
Alignment:
Q  323 tatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaa 375  Q
    |||||||||| |||||||||||||||||  |||||||||||| ||||||||||    
T  20059903 tatatatatcagtttgtaataataacaaatggttggtttcttaatttctgaaa 20059851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 543 - 590
Target Start/End: Original strand, 26049806 - 26049854
Alignment:
Q  543 atgctcacttgagcaatttt-ctatcatgttgtcatgagacaacttgtt 590  Q
    |||||||||||||||||||| |||| |||||||||||| ||||||||||    
T  26049806 atgctcacttgagcaatttttctataatgttgtcatgaaacaacttgtt 26049854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 558 - 592
Target Start/End: Original strand, 43043644 - 43043678
Alignment:
Q  558 attttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||||| |||||||||||||||||||||||    
T  43043644 attttctatcacgttgtcatgagacaacttgttat 43043678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Complemental strand, 46887063 - 46887006
Alignment:
Q  301 tggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggttgg 358  Q
    |||||||||| ||| ||| ||||||||||||| ||||||||||| || || |||||||    
T  46887063 tggtagttttttcttcaaagtctatatatatcagtttgtaataagaagaaagggttgg 46887006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 20062806 - 20062766
Alignment:
Q  428 gacagattccatccaccctttacattcctgcaatttaatat 468  Q
    |||||||| || ||||| |||||||||||||||||||||||    
T  20062806 gacagatttcaaccaccatttacattcctgcaatttaatat 20062766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 7e-66; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 259 - 470
Target Start/End: Original strand, 218650 - 218861
Alignment:
Q  259 taggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggttgg 358  Q
    ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||  ||||||||||||||| ||||||||    
T  218650 taggaagttatttctactttaaatatagaccgtaggatttagtggtagttttctctgcaagatctatatatatcaatttgtaataataacactgggttgg 218749  T
Q  359 tttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtatggagcgacagattccatccaccctttacattcctgc 458  Q
    ||||||||||||||||||||   ||| |||||||||||||||||||||||||||| ||||| |  ||  ||||||||||  ||||||||||||||||| |    
T  218750 tttcttgatttctgaaaactttgtaacacccacgccatgggagcaaacgggttcaggagtggagagattgacagattccgaccaccctttacattcctac 218849  T
Q  459 aatttaatatca 470  Q
    ||||||||||||    
T  218850 aatttaatatca 218861  T

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Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 301 - 473
Target Start/End: Original strand, 4588533 - 4588705
Alignment:
Q  301 tggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatggga 400  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  4588533 tggtagttttttctacaaagtctatatatatcagtttgtaataataacaatgggttggtttcttgatttctgaaaactctgtaacacccacgccatggga 4588632  T
Q  401 gcaaacgggttcatgagtgtatggagcgacagattccatccaccctttacattcctgcaatttaatatcaatg 473  Q
    |||||||||| |  ||||| |  ||  ||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  4588633 gcaaacgggtcctggagtggagagattgacagattccaaccaccttttacattcctacaatttaatatcaatg 4588705  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 218930 - 218982
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  218930 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 218982  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 4588772 - 4588824
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4588772 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 4588824  T

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Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 233 - 470
Target Start/End: Complemental strand, 49021184 - 49020951
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatc 332  Q
    |||||||| ||||||||  || ||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||| ||||||| ||||||||    |    
T  49021184 ttattttccagtgtcttaggaggttataggaagttatttctactttcaatatagaccgtaagatttagtggtagttttttctacaaagtctatat----c 49021089  T
Q  333 ggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtatggagcgacag 432  Q
     |||||||||||||||||| |||||||||||||||||||||||||||  ||| ||||||||||||||||||| |||||||| ||||| |  ||  |||||    
T  49021088 agtttgtaataataacaattggttggtttcttgatttctgaaaactctgtaacacccacgccatgggagcaagcgggttcaagagtggagagattgacag 49020989  T
Q  433 attccatccaccctttacattcctgcaatttaatatca 470  Q
    |||||  ||||||||||||||||| |||||||||||||    
T  49020988 attccgaccaccctttacattcctacaatttaatatca 49020951  T

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Target: chr3; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 227 - 419
Target Start/End: Complemental strand, 43543635 - 43543433
Alignment:
Q  227 tgaagattattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctata 326  Q
    |||| ||||||||||||||||||  || ||||||||||||||||| ||||| ||||||||||  ||||||||| ||||||||||||||||||||||||||    
T  43543635 tgaaaattattttctagtgtcttaggaggttataggaagttatttctacttataatatagaccttaggatttaatggtagttttctctacaaggtctata 43543536  T
Q  327 t----------atatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatga 416  Q
    |          ||||| ||||||||||||||||||| |||||||||||||||| | |||||||  ||| |||||||||||||||||||| ||||||| ||    
T  43543535 tatatatatatatatcagtttgtaataataacaatgagttggtttcttgatttttaaaaactctgtaacacccacgccatgggagcaaatgggttcagga 43543436  T
Q  417 gtg 419  Q
    |||    
T  43543435 gtg 43543433  T

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Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 257 - 379
Target Start/End: Complemental strand, 25484627 - 25484505
Alignment:
Q  257 tataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggtt 356  Q
    ||||||||||| ||| |||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||  ||||    
T  25484627 tataggaagttgtttctacttttaatttagaccgtatgatttagtggtagttttttctacaaggtctatatttatcggtttgtaataagaacaaatggtt 25484528  T
Q  357 ggtttcttgatttctgaaaactc 379  Q
    ||||||||||||||| |||||||    
T  25484527 ggtttcttgatttctaaaaactc 25484505  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 233 - 468
Target Start/End: Complemental strand, 16467770 - 16467539
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatc 332  Q
    |||||||| ||||||||  || |||||| |||||||||| || || ||||  | || |||||||| ||||||||||||  ||||| ||||||||||||||    
T  16467770 ttattttcaagtgtcttaggacgttataagaagttatttctatttgtaatccaaaccgtaggattcagtggtagtttttcctacatggtctatatatatc 16467671  T
Q  333 ggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtatggagcgacag 432  Q
     |||||||| || |||||| |||||||||||||||||||  || |||  ||| |||| ||||   |||||||| || ||||||||||||||||  || ||    
T  16467670 agtttgtaacaagaacaataggttggtttcttgatttct-taagctc--taacacccccgcc-gcggagcaaatggattcatgagtgtatggattgatag 16467575  T
Q  433 attccatccaccctttacattcctgcaatttaatat 468  Q
    ||| || |||||||||||||| ||||||||||||||    
T  16467574 atttcaaccaccctttacattactgcaatttaatat 16467539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 39944737 - 39944669
Alignment:
Q  263 aagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatat 331  Q
    ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  39944737 aagttatttctacttttaatatagaccgtaggatttagcggtagttttctctacaaggtatatatatat 39944669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 323 - 413
Target Start/End: Complemental strand, 17767414 - 17767323
Alignment:
Q  323 tatatatatcggtttgtaataataacaatgggttggtttcttgatttctg-aaaactcaataatacccacgccatgggagcaaacgggttca 413  Q
    |||||||||| ||||||||||| || || ||||||||||||||||||||| |||| |  |||| ||||||||||||||||||||||| ||||    
T  17767414 tatatatatcagtttgtaataagaataaagggttggtttcttgatttctgaaaaaatttataacacccacgccatgggagcaaacggcttca 17767323  T

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Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 323 - 413
Target Start/End: Complemental strand, 19068734 - 19068643
Alignment:
Q  323 tatatatatcggtttgtaataataacaatgggttggtttcttgatttctg-aaaactcaataatacccacgccatgggagcaaacgggttca 413  Q
    |||||||||| ||||||||||| || || ||||||||||||||||||||| |||| |  |||| ||||||||||||||||||||||| ||||    
T  19068734 tatatatatcagtttgtaataagaataaagggttggtttcttgatttctgaaaaaatttataacacccacgccatgggagcaaacggcttca 19068643  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 43543320 - 43543268
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  43543320 aacatgctcacttgaacaattttctatcatgttgtcatgagacaatttgttat 43543268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 49020881 - 49020829
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  49020881 aacatgctcaattgagcaattttctatcatgttgtcatgagacaatttgttat 49020829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 546 - 592
Target Start/End: Complemental strand, 25483038 - 25482992
Alignment:
Q  546 ctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  25483038 ctcacttgagcatttttctatcatgttgtcatgagacaacttgttat 25482992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 16467457 - 16467408
Alignment:
Q  543 atgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  16467457 atgctaacttgagcatttttctatcatgttgtcatgagacaacttgttat 16467408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 25483205 - 25483123
Alignment:
Q  387 cccacgccatgggagcaaacgggttcatgagtgtatggagcgacagattccatccaccctttacattcc-tgcaatttaatat 468  Q
    ||||| |||||||| |||||||||||| ||||| || |   |||| |||||| ||||| |||||||||| |||||||||||||    
T  25483205 cccacaccatgggaacaaacgggttcaggagtggataggttgacatattccaaccaccatttacattccatgcaatttaatat 25483123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 592
Target Start/End: Complemental strand, 39944431 - 39944398
Alignment:
Q  559 ttttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||| |||||||||||||||||||||||||    
T  39944431 ttttctattatgttgtcatgagacaacttgttat 39944398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 49237703 - 49237752
Alignment:
Q  161 acatggtggtaataataatattaaagcaaggtcgaacatgcggtgacaaa 210  Q
    |||| |||||| |||||||| |||||||| |||||| |||||||||||||    
T  49237703 acatagtggtagtaataataataaagcaaagtcgaatatgcggtgacaaa 49237752  T

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Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 233 - 417
Target Start/End: Complemental strand, 27614152 - 27613965
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatat- 331  Q
    |||||||||||||||||  || ||||||||||||||||| ||||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||     
T  27614152 ttattttctagtgtcttaggaggttataggaagttatttctacttttaa-atagaccgtagaatttagtggtagttttctctacaaagtctatatatata 27614054  T
Q  332 ---cggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgag 417  Q
       | ||||||||| |||||||| |||||||||||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||    
T  27614053 tatcagtttgtaattataacaattggttggtttcttgatttctgaaaaatctgtaacacccacgccatgggagcaaacgggttcatgag 27613965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 323 - 470
Target Start/End: Complemental strand, 24574122 - 24573975
Alignment:
Q  323 tatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtat 422  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| ||||||| ||||| |     
T  24574122 tatatatatcagtttgtaataataacaatgggttggtttcttgatttctgaaaactctgtaacacccacgccatgggagcaaatgggttcaggagtgcag 24574023  T
Q  423 ggagcgacagattccatccaccctttacattcctgcaatttaatatca 470  Q
     ||  |||| |||||  ||||||||||||||||| |||||||||||||    
T  24574022 agattgacaaattccgaccaccctttacattcctacaatttaatatca 24573975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 227 - 470
Target Start/End: Original strand, 10377235 - 10377495
Alignment:
Q  227 tgaagattattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctata 326  Q
    |||| ||||||||||||||||||  || ||||||||||||||||| |||||||||||||||   ||| ||||||||||||||||||||| ||||||||||    
T  10377235 tgaaaattattttctagtgtcttaggaggttataggaagttatttctacttttaatatagatcttagaatttagtggtagttttctctataaggtctata 10377334  T
Q  327 t------------------atatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgg 408  Q
    |                  ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||      
T  10377335 tgtgtgtgtgtgtatatatatatcagtttgtaataataacaa-gggttagtttcttgatttctgaaaactctgtaatacccacgccatgggagcaaacaa 10377433  T
Q  409 gttcatgagtgtatggagcgacagattccatccaccctttacattcctgcaatttaatatca 470  Q
    ||||| || || |  ||  |||| |||||  ||||||||||||||||| |||||||||||||    
T  10377434 gttcaggaatggagagattgacatattccgaccaccctttacattcctacaatttaatatca 10377495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 323 - 470
Target Start/End: Original strand, 10375083 - 10375230
Alignment:
Q  323 tatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtat 422  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||  ||| |||||||||||||||| ||||||||||| || || |     
T  10375083 tatatatatcagtttgtaataataacaaggggttggtttcttgatttctgaaaactctgtaacacccacgccatgggagtaaacgggttcaggaatggag 10375182  T
Q  423 ggagcgacagattccatccaccctttacattcctgcaatttaatatca 470  Q
     ||  |||| |||||| ||||||||||||||||| |||||||||||||    
T  10375183 agattgacatattccaaccaccctttacattcctacaatttaatatca 10375230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 233 - 468
Target Start/End: Original strand, 22615564 - 22615795
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatc 332  Q
    |||||||| ||||||||  || |||||| |||||||||| || || ||||  | || |||||||| ||||||||||||  ||||| ||||||||||||||    
T  22615564 ttattttcaagtgtcttaggacgttataagaagttatttctatttgtaatccaaaccgtaggattcagtggtagtttttcctacatggtctatatatatc 22615663  T
Q  333 ggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtatggagcgacag 432  Q
     |||||||||||||||||| |||||||||||||||||||  || |||  ||| |||| ||||   |||||||| || ||||||||||||||||  || ||    
T  22615664 agtttgtaataataacaataggttggtttcttgatttct-taagctc--taacacccccgcc-gcggagcaaatggattcatgagtgtatggattgatag 22615759  T
Q  433 attccatccaccctttacattcctgcaatttaatat 468  Q
    ||| || |||||||||||||| ||||||||||||||    
T  22615760 atttcaaccaccctttacattactgcaatttaatat 22615795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 233 - 468
Target Start/End: Original strand, 36561737 - 36561982
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaagg------------ 320  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||| |||  || |||||||||||||||||||||||||||                
T  36561737 ttattttctagtgtctttggaagttataggaagttatttctacttttaatatggaccatatgatttagtggtagttttctctacaaggtatatatatata 36561836  T
Q  321 --tctatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagt 418  Q
      | |||||||||| ||||||||||||||||| | ||||||||||||||| ||  ||||||   || |||| || |   |||||||| | ||||| ||||    
T  36561837 tatatatatatatcagtttgtaataataacaaggagttggtttcttgattgct-taaactc--gaacacccccgtc-gcggagcaaatgagttcacgagt 36561932  T
Q  419 gtatggagcgacagattccatccaccctttacattcctgcaatttaatat 468  Q
    |||||||  ||||||||||| ||||||||||||||||| |||||||||||    
T  36561933 gtatggattgacagattccaaccaccctttacattcctccaatttaatat 36561982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 234 - 331
Target Start/End: Complemental strand, 24574259 - 24574162
Alignment:
Q  234 tattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatat 331  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  24574259 tattttctagtgtcttaggaagttataggaagttatttctacttttaatatagaccgtaatatttagtggtagttttctctacaaggtctatatatat 24574162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 219 - 310
Target Start/End: Original strand, 10374655 - 10374746
Alignment:
Q  219 aagtgctttgaagattattttctagtgtctttagaa-gttataggaagttatttttacttttaatatagactgtaggatttagtggtagtttt 310  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  10374655 aagtgcattgaagattattttctagtgtc-ttagaaggttataggaagttatttctacttttaatatagaccttaggatttagtggtagtttt 10374746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 261 - 473
Target Start/End: Complemental strand, 19259164 - 19258961
Alignment:
Q  261 ggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggttggtt 360  Q
    ||||||||||| ||||||||||| |  | ||| ||||||  |||||||||||||||||||||  |||||        |||||||| ||||||||||||||    
T  19259164 ggaagttatttctacttttaataaa--ccgtatgatttaccggtagttttctctacaaggtcgttatat--------gtaataattacaatgggttggtt 19259075  T
Q  361 tcttgatttctgaaaactcaataatacccacgccatgg-gagcaaacgggttcatgagtgtatggagcgacagattccatccaccctttacattcctgca 459  Q
    |||||||||||||||   ||| |   ||  |||||    ||||| | |||||||||||||||||||  | ||||||||| ||||||||||||||||||||    
T  19259074 tcttgatttctgaaactccaacacccccgccgccacaaagagcatatgggttcatgagtgtatggattggcagattccaaccaccctttacattcctgca 19258975  T
Q  460 atttaatatcaatg 473  Q
    ||||||||||||||    
T  19258974 atttaatatcaatg 19258961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 10375303 - 10375355
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10375303 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 10375355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 10377565 - 10377617
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10377565 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 10377617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 19258894 - 19258842
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19258894 aacatgctcacttgagcaattttctatcaagttgtcatgagacaacttgttat 19258842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 24573905 - 24573853
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24573905 aacatgctcacttgagcaattttctatcaagttgtcatgagacaacttgttat 24573853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 27613853 - 27613801
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27613853 aacatgctcacttgagcaattttctatcatgttgtcatgagacaatttgttat 27613801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 22615877 - 22615926
Alignment:
Q  543 atgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  22615877 atgctaacttgagcatttttctatcatgttgtcatgagacaacttgttat 22615926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 37509898 - 37509849
Alignment:
Q  543 atgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  37509898 atgctcacttgagtatttttctattatgttgtcatgagacaacttgttat 37509849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 36562054 - 36562106
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||||||||| |||||||| |  |||||||||||||| |||||||    
T  36562054 aacatgctcacttgagcatttttctattactttgtcatgagacaatttgttat 36562106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 105; Significance: 4e-52; HSPs: 3)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 301 - 473
Target Start/End: Complemental strand, 10934 - 10762
Alignment:
Q  301 tggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatggga 400  Q
    |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||  ||| |||||||||||||||    
T  10934 tggtagttttttctacaaagtctatatatatcagtttgtaataataacaatgggttggtttcttgatttcagaaaactctgtaacacccacgccatggga 10835  T
Q  401 gcaaacgggttcatgagtgtatggagcgacagattccatccaccctttacattcctgcaatttaatatcaatg 473  Q
    |||||| |||||| ||||| |  ||  ||||||||||  ||||||||||||||||| ||||||||||||||||    
T  10834 gcaaacaggttcaagagtggagagattgacagattccgaccaccctttacattcctacaatttaatatcaatg 10762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 11132 - 11014
Alignment:
Q  92 caagatccatccttatgcaagattcaatgtctaaaatctattattatgtcctggagtatttcaacgtgaacatggtggtaataataatattaaagcaagg 191  Q
    |||||||||||||||| |||||| ||||| ||||| |||||||||||| | ||||||||||||||||||| ||||||| |||||||||||||| |||| |    
T  11132 caagatccatccttattcaagatccaatggctaaattctattattatgacttggagtatttcaacgtgaaaatggtggcaataataatattaaggcaaag 11033  T
Q  192 tcgaacatgcggtgacaaa 210  Q
    |||||||||||||||||||    
T  11032 tcgaacatgcggtgacaaa 11014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 540 - 592
Target Start/End: Complemental strand, 10695 - 10643
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10695 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 10643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 233 - 358
Target Start/End: Original strand, 241097 - 241222
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatatc 332  Q
    |||||||||||||||||  |||||||||||||||||||| |||||||||| ||||||||| ||||||||| |||||||  ||||||||||||||||||||    
T  241097 ttattttctagtgtcttaggaagttataggaagttatttctacttttaatgtagactgtatgatttagtgctagtttttcctacaaggtctatatatatc 241196  T
Q  333 ggtttgtaataataacaatgggttgg 358  Q
     ||||||||||| ||||  |||||||    
T  241197 agtttgtaataagaacagagggttgg 241222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 241414 - 241463
Alignment:
Q  543 atgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    ||||||||||||| | |||| ||| |||||||||||||||||||||||||    
T  241414 atgctcacttgagtatttttttattatgttgtcatgagacaacttgttat 241463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 92 - 210
Target Start/End: Original strand, 20506984 - 20507102
Alignment:
Q  92 caagatccatccttatgcaagattcaatgtctaaaatctattattatgtcctggagtatttcaacgtgaacatggtggtaataataatattaaagcaagg 191  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||||| | ||||||||||||||||||| ||||| | |||||||||||||| |||| |    
T  20506984 caagatccatccttattcaagatccaatgtctaaattctattattatgacttggagtatttcaacgtgaaaatggtagcaataataatattaaggcaaag 20507083  T
Q  192 tcgaacatgcggtgacaaa 210  Q
    ||||||||| |||||||||    
T  20507084 tcgaacatgtggtgacaaa 20507102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 7014885 - 7014787
Alignment:
Q  233 ttattttctagtgtctttagaagttataggaagttatttttacttttaatatagactgtaggatttagtggtagttttctctacaaggtctatatatat 331  Q
    |||||||||||||||||  ||||||||| |||||||||| || ||||||| ||||| |||||||||||||||||||||  |||||| ||||||||||||    
T  7014885 ttattttctagtgtcttaggaagttataagaagttatttctatttttaatctagaccgtaggatttagtggtagtttttcctacaaagtctatatatat 7014787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 31813648 - 31813700
Alignment:
Q  540 aacatgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31813648 aacatgctcacttgagcaattttctatcatgttgtcatgagacaactttttat 31813700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 473
Target Start/End: Complemental strand, 7014471 - 7014325
Alignment:
Q  323 tatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtat 422  Q
    ||||||||||  |||||||||| ||||| ||||||||||||||||||||| ||||||  ||| |||| ||||   | |||| | ||||||| ||||| ||    
T  7014471 tatatatatcattttgtaataagaacaaggggttggtttcttgatttctg-aaactc--taacacccccgcc-gcgtagcatatgggttcacgagtggat 7014376  T
Q  423 ggagcgacagattccatccaccctttacattcctgcaatttaatatcaatg 473  Q
      |  || ||||| || ||||||||||||||||||||||||||||| ||||    
T  7014375 aaattgatagatttcaaccaccctttacattcctgcaatttaatattaatg 7014325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 7014248 - 7014199
Alignment:
Q  543 atgctcacttgagcaattttctatcatgttgtcatgagacaacttgttat 592  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||||||    
T  7014248 atgctcacttcagcatttttcgatcatgttgtcatgagacaacttgttat 7014199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 19282020 - 19281968
Alignment:
Q  323 tatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaa 375  Q
    |||||||||| ||||||||||| || || ||||||||||||||||||||||||    
T  19282020 tatatatatcagtttgtaataagaataaggggttggtttcttgatttctgaaa 19281968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 310
Target Start/End: Original strand, 1494760 - 1494810
Alignment:
Q  260 aggaagttatttttacttttaatatagactgtaggatttagtggtagtttt 310  Q
    |||||||||||| |||||||||| ||||| |||||||||| ||||||||||    
T  1494760 aggaagttatttctacttttaatttagaccgtaggatttattggtagtttt 1494810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 1494824 - 1494880
Alignment:
Q  363 ttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtg 419  Q
    |||||||||||||||||   || |||||||||||||||| ||||||||||| |||||    
T  1494824 ttgatttctgaaaactccgcaacacccacgccatgggagaaaacgggttcaggagtg 1494880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 21947189 - 21947246
Alignment:
Q  301 tggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggttgg 358  Q
    |||||||||| ||| ||| ||||||||||||| ||||||||||| || || |||||||    
T  21947189 tggtagttttttctgcaaagtctatatatatcagtttgtaataagaagaaagggttgg 21947246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 31813410 - 31813467
Alignment:
Q  301 tggtagttttctctacaaggtctatatatatcggtttgtaataataacaatgggttgg 358  Q
    ||||||||||  || ||| ||||||||||||| ||||||||||| ||||| |||||||    
T  31813410 tggtagtttttcctgcaaagtctatatatatcagtttgtaataagaacaaagggttgg 31813467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 316 - 466
Target Start/End: Original strand, 197972 - 198122
Alignment:
Q  316 caaggtctatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatg 415  Q
    ||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||  ||| ||||||||||||| |||||||||||||| |    
T  197972 caaggtctatatatattagtttgtaataagaacaaagggttggtttcttgatttctgaaaactctgtaacacccacgccatggtagcaaacgggttcagg 198071  T
Q  416 agtgtatggagcgacagattccatccaccctttacattcctgcaatttaat 466  Q
    | || || ||  ||||||||||| ||||| |||   ||||| |||||||||    
T  198072 aatggatagatagacagattccagccaccattttatttccttcaatttaat 198122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 323 - 466
Target Start/End: Original strand, 198566 - 198709
Alignment:
Q  323 tatatatatcggtttgtaataataacaatgggttggtttcttgatttctgaaaactcaataatacccacgccatgggagcaaacgggttcatgagtgtat 422  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| ||   ||| |||||| ||||| ||||||||||||||| ||||| ||    
T  198566 tatatatatcagtttgtaataagaacaaagggttggtttcttgatttctaaaatctatgtaacacccacaccatgagagcaaacgggttcaggagtggat 198665  T
Q  423 ggagcgacagattccatccaccctttacattcctgcaatttaat 466  Q
     ||  ||||||||||| ||||| |||   ||||| |||||||||    
T  198666 agattgacagattccagccaccattttatttccttcaatttaat 198709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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