View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18712_low_6 (Length: 429)
Name: NF18712_low_6
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18712_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 148 - 305
Target Start/End: Complemental strand, 1028403 - 1028242
Alignment:
| Q |
148 |
caaaagtcaactaattttcttttgtatttacgagccagcactgatgaagtaatcgttgaactcatgagaacaaagatgaccatgagcttttgcttccaag |
247 |
Q |
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| T |
1028403 |
caaaagtcaactaattttcttttgtatttacgagccagcactgatgaagtaatcgttgaactcatgagaacaaagatgaccatgagcttttgcttccaag |
1028304 |
T |
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| Q |
248 |
ggctaacatcgatcgtatttggtatc----tctggtattttaaatgatatttaaatgttggt |
305 |
Q |
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| T |
1028303 |
ggccaacatcgatcgtatttggtatctctgtctggtatttcgaatgatttttaaatgttggt |
1028242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 1033688 - 1033609
Alignment:
| Q |
71 |
ttccaatgaacgtcttctacacagaccttcccatagaaatgaagcagaatttggaagcagcaactgccagcaatcaccaa |
150 |
Q |
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| T |
1033688 |
ttccaatgaacgtcttctaccaagatcttcccacagaaatgaagcagaatttggaagcagcaactgccaggaatcaccaa |
1033609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 1032819 - 1032773
Alignment:
| Q |
325 |
ttttactttgttcgtgcgtgtac---tttgtatgctaattataattc |
368 |
Q |
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| T |
1032819 |
tttttctttgttcgtgcgtgtacttttttgtatgctaattataattc |
1032773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 50832377 - 50832502
Alignment:
| Q |
19 |
atcgtacttcagggatttcattgggtcagttccatctaccaagagttccaacttccaatgaacgtcttctacacagaccttcccatagaaatgaagca-- |
116 |
Q |
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| T |
50832377 |
atcgtacttcagcgatttcattgggtcagttccatctaccaagag-------ttccaataaacgtctcctaccaagatcttcccacagaaatgaagcagc |
50832469 |
T |
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| Q |
117 |
-gaatttggaagcagcaactgccagcaatcacc |
148 |
Q |
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| T |
50832470 |
ggaattcggaagcagcaactgccaggaatcacc |
50832502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 4516227 - 4516149
Alignment:
| Q |
72 |
tccaatgaacgtcttctacacagaccttcccatagaaatgaagcagaatttggaagcagcaactgccagcaatcaccaa |
150 |
Q |
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| T |
4516227 |
tccaatgaacgtcttctaccaagatcttcccacagaaatgaagcagaatttggaagcagcagctgccaggaatcaccaa |
4516149 |
T |
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