View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18712_low_7 (Length: 425)
Name: NF18712_low_7
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18712_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 406
Target Start/End: Complemental strand, 2123606 - 2123210
Alignment:
| Q |
10 |
aagaaaatatggaagaagtgtgaagagctactatgtagtgagtgttacttgaagcaactactagtctttcaattatatagaggtcaaggatgggtcgaga |
109 |
Q |
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| T |
2123606 |
aagaaagtatggaagaagtgtgaagagctactatgtagtgagtgttacttgaagcaactactagtctttcaattatatagaggtcaaggatgggtcgaga |
2123507 |
T |
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| Q |
110 |
gaaaataaaggttaggtgcattaaattaataatgtaatgtacaaagtacaagatgatatattcattnnnnnnnnnnnnnnnnnnngtacaagaagaaatt |
209 |
Q |
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| T |
2123506 |
gaaaataaaggttaggtgcattaaattaataatgtaatgtacaaagtacaagatgatatattcattaaaaaaataaataaaaaaagtacgagaagaaatt |
2123407 |
T |
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| Q |
210 |
gtttaggtgtatatacagcttctacccacgtgcctctataacattgtgtctactaaactagtatatctagtttctcataagagtatgtgatgccactaat |
309 |
Q |
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| T |
2123406 |
gtttaggtgtata--caggttctacccacgtgcctctataacattgtgtctactaaactagtatatctagtttctcataagagaatgtgatgccactaat |
2123309 |
T |
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| Q |
310 |
ctatatattatgctattgacattaaattgtgttgaacgcaaggtttatc--tttgagttagaattggaccgtacattagatgcatgttagattttagaa |
406 |
Q |
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| T |
2123308 |
ctatatattatgctattgacattaaattgtgttgaacgtaaggtttatctttttgagttagaattggaccgtacattagatgcatgttagattttagaa |
2123210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 2139433 - 2139362
Alignment:
| Q |
255 |
gtgtctactaaactagtatatctagtttctcataagagtatgtgatgccactaatctatatattatgctatt |
326 |
Q |
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| T |
2139433 |
gtgtctgccaaacttgtatagctagtttctcataagagtatgtgttgcccttaatctatatactatgctatt |
2139362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 2139559 - 2139483
Alignment:
| Q |
83 |
tatatagaggtcaaggatgggtcgagagaaaataaaggttaggtgcattaaattaataatgtaatgtacaaagtacaaga |
162 |
Q |
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| T |
2139559 |
tatatagaggtcaagt-tgggtag-gagaaaa-aaatgttaggtaaattaaatcaataatgtaatgtacaaagtacaaga |
2139483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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