View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18712_low_8 (Length: 419)

Name: NF18712_low_8
Description: NF18712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18712_low_8
NF18712_low_8
[»] chr8 (15 HSPs)
chr8 (5-406)||(2891329-2891737)
chr8 (5-406)||(3143525-3143934)
chr8 (1-406)||(2794436-2794846)
chr8 (164-406)||(2877036-2877278)
chr8 (5-90)||(2876875-2876960)
chr8 (2-75)||(8627613-8627686)
chr8 (246-355)||(3495687-3495796)
chr8 (4-75)||(3495433-3495504)
chr8 (4-75)||(14389007-14389078)
chr8 (246-355)||(8627344-8627456)
chr8 (160-219)||(3495580-3495639)
chr8 (11-73)||(3500544-3500606)
chr8 (246-355)||(14389260-14389369)
chr8 (156-195)||(3500680-3500719)
chr8 (156-190)||(8627518-8627552)
[»] chr4 (1 HSPs)
chr4 (126-191)||(13005652-13005716)
[»] chr7 (1 HSPs)
chr7 (246-346)||(18848218-18848318)


Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 5 - 406
Target Start/End: Original strand, 2891329 - 2891737
Alignment:
Q  5 cccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgaggagacaacacatcagaaacga--cactaaat 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||  ||||||||    
T  2891329 cccttgttcaaaaatacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgaggagataacacatcagaaccgatgcactaaat 2891428  T
Q  103 ccattnnnnnnn-gagccatcatttcataatatattagcaatcaatcaatgatgaatgatgatttacatttcacaagagctccctcatttggacggt--- 198  Q
    |||||        |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  2891429 ccattaaaaaagagagccatcatatcataatatattagcaatcaatcaatgatgaatgatgatttacatttcacaagagctccctcatttggacggtacg 2891528  T
Q  199 -cagctccttctccttccttgagaagcagcttacgaaaagttgctttgttccaagaaactaactcgagagtgatctgcaatgttgcgttaggtggaactg 297  Q
     |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  2891529 tcagctccttctccttccttgagaagctgcttatgaaaagttgctttgttccaagaaactaacctgagagtgatctgcaatgttgcgttaggtggaactg 2891628  T
Q  298 aaccttcatcatggtgagctggcctgcccttgtcaccaaatccatctataacagaatacaaggatttctagttatgttccgttctcaaagagtagtgatg 397  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2891629 aagcttcatcatggtgagctggcctgcccttgtcaccaaatccatctataacagaatacgaggatttctagttatgttccgttctcaaagagtagtgatg 2891728  T
Q  398 cttgttttg 406  Q
    |||||||||    
T  2891729 cttgttttg 2891737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 5 - 406
Target Start/End: Complemental strand, 3143934 - 3143525
Alignment:
Q  5 cccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgaggagacaacacatcagaaacga--cactaaat 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||  ||||||||    
T  3143934 cccttgttcaaaaatacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgaggagataacacatcagaaccgatgcactaaat 3143835  T
Q  103 ccattnnnnnnn--gagccatcatttcataatatattagcaatcaatcaatgatgaatgatgatttacatttcacaagagctccctcatttggacggt-- 198  Q
    |||||         |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  3143834 ccattaaaaaaaaagagccatcatatcataatatattagcaatcaatcaatgatgaatgatgatttacatttcacaagagctccctcatttggacggtac 3143735  T
Q  199 --cagctccttctccttccttgagaagcagcttacgaaaagttgctttgttccaagaaactaactcgagagtgatctgcaatgttgcgttaggtggaact 296  Q
      |||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  3143734 atcagctccttctccttccttgagaagctgcttatgaaaagttgctttgtaccaagaaactaacctgagagtgatctgcaatgttgcgttaggtggaact 3143635  T
Q  297 gaaccttcatcatggtgagctggcctgcccttgtcaccaaatccatctataacagaatacaaggatttctagttatgttccgttctcaaagagtagtgat 396  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3143634 gaagcttcatcatggtgagctggcctgcccttgtcaccaaatccatctataacagaatacgaggatttctagttatgttccgttctcaaagagtagtgat 3143535  T
Q  397 gcttgttttg 406  Q
    ||||||||||    
T  3143534 gcttgttttg 3143525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 2794846 - 2794436
Alignment:
Q  1 atagcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgaggagacaacacatcagaaacga--cact 98  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||||| |||  ||||    
T  2794846 atagcccttcttaaaaaatacagtgccatcttgcagcttaccaattagtttcactacaaaaatgcaaaatgaggatatatcacatcagaaccgatgcact 2794747  T
Q  99 aaatccattnnnnnnnga--gccatcatttcataatatattagcaatcaatcaatgatgaatgatgatttacatttcacaagagctccctcatttggacg 196  Q
    |||||||||        |  |||||||| |||||||||||||||| | ||||||||||          |||||||||||||||||||||||||||||||     
T  2794746 aaatccatttaaaaagaacagccatcatatcataatatattagca-tgaatcaatgat----------ttacatttcacaagagctccctcatttggaca 2794658  T
Q  197 gtcagctccttctccttccttgagaagcagcttacgaaaag----ttgctttg--------ttccaagaaactaactcgagagtgatctgcaatgttgcg 284  Q
    |||  | ||||||||||||||||| | || |||||||||||    || ||| |        ||||||||||| ||||||||| | |||||||||||||||    
T  2794657 gtcgtccccttctccttccttgaggaccatcttacgaaaaggtccttccttaggtccttccttccaagaaacaaactcgagaataatctgcaatgttgcg 2794558  T
Q  285 ttaggtggaactgaaccttcatcatggtgagctggcctgcccttgtcaccaaatccatctataacagaatacaaggatttctagttatgttccgttctca 384  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  | |||| |||||||| |||| ||||||    
T  2794557 ttaggtggaactgaaccttcatcatggtgagctggcttgcccttgtcaccaaatccatctataacagaatatgaagattactagttatattccattctca 2794458  T
Q  385 aagagtagtgatgcttgttttg 406  Q
    ||||||||||||| ||| ||||    
T  2794457 aagagtagtgatgtttgctttg 2794436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 164 - 406
Target Start/End: Original strand, 2877036 - 2877278
Alignment:
Q  164 tttacatttcacaagagctccctcatttggacggtcagctccttctccttccttgagaagcagcttacgaaaagttgctttgttccaagaaactaactcg 263  Q
    |||||||||||||||||||||||||||||||| |||  ||||||||||||||||||| | || ||||||||||| |  ||  ||||||||||| ||||||    
T  2877036 tttacatttcacaagagctccctcatttggacagtcgtctccttctccttccttgaggaccatcttacgaaaaggtcattccttccaagaaacaaactcg 2877135  T
Q  264 agagtgatctgcaatgttgcgttaggtggaactgaaccttcatcatggtgagctggcctgcccttgtcaccaaatccatctataacagaatacaaggatt 363  Q
    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||    
T  2877136 agaataatctgcaatgttgcgttaggtggaactgaaccttcatcatggtgagctggcttgcccttgtcaccaaatccatctataacagaatatgaagatt 2877235  T
Q  364 tctagttatgttccgttctcaaagagtagtgatgcttgttttg 406  Q
     |||||||| ||||||||| ||||||||||||| |||||||||    
T  2877236 actagttatattccgttcttaaagagtagtgatacttgttttg 2877278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 2876875 - 2876960
Alignment:
Q  5 cccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgaggagacaacacatcagaa 90  Q
    ||||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||||||||    
T  2876875 cccttcttaaaaaatacagtgccatcttgcagcttaccaattagtttcactacaaaaatgcaaaatgaggatatatcacatcagaa 2876960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 8627686 - 8627613
Alignment:
Q  2 tagcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgagga 75  Q
    |||||||| || |||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  8627686 tagcccttcttaaaaaatacagtgccatcttgcagcttaccaattagtttcactacgaaaatgcaaaatgagga 8627613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 355
Target Start/End: Original strand, 3495687 - 3495796
Alignment:
Q  246 ttccaagaaactaactcgagagtgatctgcaatgttgcgttaggtggaactgaaccttcatcatggtgagctggcctgcccttgtcaccaaatccatcta 345  Q
    ||||||||||||||||| || || |||| ||||||||| ||||||||||||| ||||||||||   ||||||||  |||| || ||| ||||||||||||    
T  3495687 ttccaagaaactaactcaagggtaatctccaatgttgcattaggtggaactgcaccttcatcaccatgagctggtttgcctttctcatcaaatccatcta 3495786  T
Q  346 taacagaata 355  Q
    | ||| ||||    
T  3495787 tcacacaata 3495796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 3495433 - 3495504
Alignment:
Q  4 gcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgagga 75  Q
    |||||| |||||||  |||||||||||||||| ||||||||||||||| ||| |||| ||||||||||||||    
T  3495433 gcccttcttcaaaaagacagtgccatcttgcaacttaccaattagtttcactgcaaagatgcaaaatgagga 3495504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 14389007 - 14389078
Alignment:
Q  4 gcccttgttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgagga 75  Q
    |||||| ||||||| ||||||| ||||||||| ||||||||| ||||| ||| |||| ||||||||||||||    
T  14389007 gcccttcttcaaaaatacagtgtcatcttgcaacttaccaataagtttcacttcaaagatgcaaaatgagga 14389078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 355
Target Start/End: Complemental strand, 8627456 - 8627344
Alignment:
Q  246 ttccaagaaactaactcgagagtgatctgcaatg---ttgcgttaggtggaactgaaccttcatcatggtgagctggcctgcccttgtcaccaaatccat 342  Q
    ||||||||||| ||||| ||||| |||||||| |   |||| ||||||||||||||||||||||    |||||||||| | ||| ||| || ||||||||    
T  8627456 ttccaagaaaccaactcaagagtaatctgcaacgacgttgcattaggtggaactgaaccttcattgccgtgagctggctttcccatgtaacgaaatccat 8627357  T
Q  343 ctataacagaata 355  Q
    |||||||| ||||    
T  8627356 ctataacacaata 8627344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 3495580 - 3495639
Alignment:
Q  160 atgatttacatttcacaagagctccctcatttggacggtcagctccttctccttccttga 219  Q
    ||||||||||||| |||| |||||| ||||||||||| |||  |||||||||||||||||    
T  3495580 atgatttacattttacaacagctccatcatttggacgctcatatccttctccttccttga 3495639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 3500544 - 3500606
Alignment:
Q  11 ttcaaaagtacagtgccatcttgcagcttaccaattagttttactacaaaaatgcaaaatgag 73  Q
    ||||||| || || |||| |||||||| ||||||||||||| |||||| ||||||||||||||    
T  3500544 ttcaaaaatatagagccaccttgcagcctaccaattagtttcactacacaaatgcaaaatgag 3500606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 355
Target Start/End: Original strand, 14389260 - 14389369
Alignment:
Q  246 ttccaagaaactaactcgagagtgatctgcaatgttgcgttaggtggaactgaaccttcatcatggtgagctggcctgcccttgtcaccaaatccatcta 345  Q
    ||||||||||| ||||| ||  | |||| ||||||||| ||||||||||||| |  |||||||   ||||||||  |||||||  |||||||||||||||    
T  14389260 ttccaagaaaccaactcaaggttaatcttcaatgttgcattaggtggaactgcaatttcatcaccatgagctggtttgcccttcacaccaaatccatcta 14389359  T
Q  346 taacagaata 355  Q
    | ||| ||||    
T  14389360 ttacacaata 14389369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 3500680 - 3500719
Alignment:
Q  156 aatgatgatttacatttcacaagagctccctcatttggac 195  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  3500680 aatgatgatttacatttcacaacagatccctcatttggac 3500719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 8627552 - 8627518
Alignment:
Q  156 aatgatgatttacatttcacaagagctccctcatt 190  Q
    |||||||||||||||||||||| ||||||||||||    
T  8627552 aatgatgatttacatttcacaacagctccctcatt 8627518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 13005716 - 13005652
Alignment:
Q  126 tcataatatattagcaatcaatcaatgatgaatgatgatttacatttcacaagagctccctcattt 191  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||  |||||||    
T  13005716 tcataatatattagca-tcaatgaattatgaatgatgatttacatttcacaagagctttctcattt 13005652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 346
Target Start/End: Original strand, 18848218 - 18848318
Alignment:
Q  246 ttccaagaaactaactcgagagtgatctgcaatgttgcgttaggtggaactgaaccttcatcatggtgagctggcctgcccttgtcaccaaatccatcta 345  Q
    ||||||||||| ||||| || || ||||||| || ||| || |||||||||| ||||||||||   || |||||| | ||||| ||||||||||||||||    
T  18848218 ttccaagaaaccaactcaagtgtaatctgcagtgatgcatttggtggaactgcaccttcatcaccatgcgctggcttccccttctcaccaaatccatcta 18848317  T
Q  346 t 346  Q
    |    
T  18848318 t 18848318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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