View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18713_high_10 (Length: 220)

Name: NF18713_high_10
Description: NF18713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18713_high_10
NF18713_high_10
[»] chr8 (2 HSPs)
chr8 (13-170)||(36283566-36283723)
chr8 (117-162)||(31710416-31710461)
[»] chr7 (2 HSPs)
chr7 (13-170)||(11098598-11098755)
chr7 (83-164)||(781351-781432)
[»] chr6 (1 HSPs)
chr6 (13-170)||(17998574-17998731)
[»] scaffold0010 (1 HSPs)
scaffold0010 (83-164)||(128644-128725)
[»] chr4 (4 HSPs)
chr4 (85-169)||(723295-723379)
chr4 (84-170)||(10755781-10755867)
chr4 (84-170)||(10969550-10969636)
chr4 (120-163)||(12325892-12325935)
[»] scaffold0130 (1 HSPs)
scaffold0130 (112-162)||(17288-17338)
[»] chr3 (1 HSPs)
chr3 (117-162)||(17594919-17594964)
[»] chr5 (1 HSPs)
chr5 (117-165)||(11203645-11203693)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 36283566 - 36283723
Alignment:
Q  13 aatatatcaagcacaaaaatttaaagtatagcaaaataagaaggatatgaaaagtaaaaccattcttccatgttggcatcgagggaatccataatgaatt 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36283566 aatatattaagcacaaaaatttaaagtatagcaaaataagaaggatatgaaaagtaaaaccattcttccaagttggcatcgagggaatccataatgaatt 36283665  T
Q  113 tatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgttg 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36283666 tatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgttg 36283723  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 31710461 - 31710416
Alignment:
Q  117 tccgcctgttcataagaatgactatgatggtgatgatttgagctcc 162  Q
    |||||||||||||||| |||||||||||||||| || |||||||||    
T  31710461 tccgcctgttcataaggatgactatgatggtgacgaattgagctcc 31710416  T

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Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 11098755 - 11098598
Alignment:
Q  13 aatatatcaagcacaaaaatttaaagtatagcaaaataagaaggatatgaaaagtaaaaccattcttccatgttggcatcgagggaatccataatgaatt 112  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098755 aatatattaagcacaaaaatttaaagtatagcaaaataagaaagatatgaaaagtaaaaccattcttccatgttggcatcgagggaatccataatgaatt 11098656  T
Q  113 tatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgttg 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098655 tatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgttg 11098598  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 781351 - 781432
Alignment:
Q  83 tgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctc 164  Q
    |||||||||| || ||| |||||||| ||| ||||| || |||||||| | | ||||||||||||||||| |||||||||||    
T  781351 tgttggcatcaagagaaaccataatgtattcatctctgcttgttcatatggaagactatgatggtgatgaattgagctcctc 781432  T

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Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 17998574 - 17998731
Alignment:
Q  13 aatatatcaagcacaaaaatttaaagtatagcaaaataagaaggatatgaaaagtaaaaccattcttccatgttggcatcgagggaatccataatgaatt 112  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17998574 aatatattaagcacaaaaatttaaagtatagcaaaataagaaagatatgaaaagtaaaaccattcttccatgttggcatcgagggaatccataatgaatt 17998673  T
Q  113 tatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgttg 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17998674 tatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgttg 17998731  T

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Target: scaffold0010 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 128644 - 128725
Alignment:
Q  83 tgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctc 164  Q
    |||||||||| || ||| |||||||| ||| ||||| || |||||||||| ||||||||||||||||||| |||||||||||    
T  128644 tgttggcatcaagagaaaccataatgtattcatctctgcatgttcataaggatgactatgatggtgatgaattgagctcctc 128725  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 169
Target Start/End: Complemental strand, 723379 - 723295
Alignment:
Q  85 ttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgtt 169  Q
    ||||||||||| | | |||||||||||| ||||||||||| |||| ||||||||||| ||| | |||| ||||| ||||||||||    
T  723379 ttggcatcgagaggaaccataatgaattcatctccgcctgctcatgagaatgactataatgtttatgaattgaggtcctcttgtt 723295  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 10755867 - 10755781
Alignment:
Q  84 gttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgttg 170  Q
    |||||||||||| ||| ||| |||||||| ||||||||||| |||| || |||||||| ||| | |||| ||||| |||||||||||    
T  10755867 gttggcatcgagagaaaccacaatgaattcatctccgcctgctcatgaggatgactataatgtttatgaattgaggtcctcttgttg 10755781  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 10969636 - 10969550
Alignment:
Q  84 gttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcctcttgttg 170  Q
    |||||||||||| ||| ||| |||||||| ||||||||||| |||| || |||||||| ||| | |||| ||||| |||||||||||    
T  10969636 gttggcatcgagagaaaccacaatgaattcatctccgcctgctcatgaggatgactataatgtttatgaattgaggtcctcttgttg 10969550  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 12325935 - 12325892
Alignment:
Q  120 gcctgttcataagaatgactatgatggtgatgatttgagctcct 163  Q
    ||||||||||||| | |||||||||||||| |||||||||||||    
T  12325935 gcctgttcataaggaggactatgatggtgacgatttgagctcct 12325892  T

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Target: scaffold0130 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 17288 - 17338
Alignment:
Q  112 ttatctccgcctgttcataagaatgactatgatggtgatgatttgagctcc 162  Q
    |||| |||||||||||||||| |||||||||||||||| || |||| ||||    
T  17288 ttatatccgcctgttcataaggatgactatgatggtgacgaattgaactcc 17338  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 17594964 - 17594919
Alignment:
Q  117 tccgcctgttcataagaatgactatgatggtgatgatttgagctcc 162  Q
    |||||||||||| ||| |||||||||||||||| || |||||||||    
T  17594964 tccgcctgttcacaaggatgactatgatggtgacgaattgagctcc 17594919  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 11203693 - 11203645
Alignment:
Q  117 tccgcctgttcataagaatgactatgatggtgatgatttgagctcctct 165  Q
    |||||||||| ||||| | |||||||||||||| || ||||||||||||    
T  11203693 tccgcctgtttataaggaagactatgatggtgacgaattgagctcctct 11203645  T

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