View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18713_low_1 (Length: 464)
Name: NF18713_low_1
Description: NF18713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18713_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 37779006 - 37778562
Alignment:
| Q |
1 |
gaataaatgcttggaattgcctttttaaaagaatttcacaaaatgtcttgagattatttttctaacaatttttatttatacaaagatatggaaaagcttt |
100 |
Q |
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| T |
37779006 |
gaataaatgcttggaatttcctttttaaaagaatttcacaaaatgtcttgagattatttttctaacaatttttatttatacaaagatatggaaaagcttt |
37778907 |
T |
|
| Q |
101 |
ttaaagaagtaaacatatttttcctgaaaattctcacaataattataagaaacattttaaaataaaatatataccaattaaaacagtcactaaatttaac |
200 |
Q |
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| T |
37778906 |
tttaagaagtaaacatatttttcctgaaaattctcacaataattataagaaacattttaaaataaaatatataccaattaaaacagtcactaaatttaac |
37778807 |
T |
|
| Q |
201 |
attattgtttaaagaagcatgaatgaatggaagnnnnnnnnnnttacagttcacaaagagtaagaagaaaagaagcaaaatggacctatcaaagtaaaca |
300 |
Q |
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| T |
37778806 |
attattgtttaaagaagcatgaatgaatggaag--aaaaaaaattacagttcacaaagagtaagaagaaaagaagcaaaatggacctatcaaagtaaaca |
37778709 |
T |
|
| Q |
301 |
gcaaggggaacagtgaaagccgctgcaaaactgaggcggtaagcggtagccaccctcatactcattccatcgtttatgacgagcttgtacatgatattca |
400 |
Q |
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| T |
37778708 |
gcaaggggaacagtgaaagccgctgcaaaactgaggcggtaagcggtggccaccctcatgctcattccatcgtttatgacgagcttgtacatgatattca |
37778609 |
T |
|
| Q |
401 |
cagcagcaaatgcaatctggcaaaccaccattaacaccactggtttt |
447 |
Q |
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| T |
37778608 |
cagcagcaaatgcaatctggcaaaccaccattaacaccactggtttt |
37778562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 272 - 419
Target Start/End: Complemental strand, 37806543 - 37806396
Alignment:
| Q |
272 |
gaagcaaaatggacctatcaaagtaaacagcaaggggaacagtgaaagccgctgcaaaactgaggcggtaagcggtagccaccctcatactcattccatc |
371 |
Q |
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||||||||||| ||||||||||| || |||||| |||| ||||||||| | ||||||| ||||||||| || | ||| |||||||||||||| ||||| |
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| T |
37806543 |
gaagcaaaatgaacctatcaaagataaaagcaagaggaatagtgaaagctgatgcaaaagcgaggcggtaggcagaagcaaccctcatactcatcccatc |
37806444 |
T |
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| Q |
372 |
gtttatgacgagcttgtacatgatattcacagcagcaaatgcaatctg |
419 |
Q |
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| T |
37806443 |
atttataacgagcttgtacatgatattcacagcagcatatgcaatctg |
37806396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 419
Target Start/End: Complemental strand, 37796468 - 37796356
Alignment:
| Q |
307 |
ggaacagtgaaagccgctgcaaaactgaggcggtaagcggtagccaccctcatactcattccatcgtttatgacgagcttgtacatgatattcacagcag |
406 |
Q |
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| T |
37796468 |
ggaatagtgaaagctgatgcacaaatgaggcggtaagcagtcgcaaccctcatactcatcccatcatttataacgagcttgcacatgatattcatagcag |
37796369 |
T |
|
| Q |
407 |
caaatgcaatctg |
419 |
Q |
| |
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|| |||||||||| |
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| T |
37796368 |
catatgcaatctg |
37796356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 419
Target Start/End: Complemental strand, 37785849 - 37785714
Alignment:
| Q |
284 |
acctatcaaagtaaacagcaaggggaacagtgaaagccgctgcaaaactgaggcggtaagcggtagccaccctcatactcattccatcgtttatgacgag |
383 |
Q |
| |
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||||||||||| || |||||| |||| |||||||| | ||||||| |||| |||||||| || ||||||||||| ||||| ||||| |||||| | || |
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| T |
37785849 |
acctatcaaagataagagcaagaggaatggtgaaagctgatgcaaaagtgagacggtaagcagtggccaccctcatgctcatcccatcatttatggcaag |
37785750 |
T |
|
| Q |
384 |
cttgtacatgatattcacagcagcaaatgcaatctg |
419 |
Q |
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|||| | |||||||||||||| ||| ||||||||| |
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| T |
37785749 |
cttgcatatgatattcacagctgcacctgcaatctg |
37785714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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