View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18713_low_2 (Length: 399)

Name: NF18713_low_2
Description: NF18713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18713_low_2
NF18713_low_2
[»] chr8 (12 HSPs)
chr8 (21-397)||(29601865-29602236)
chr8 (180-332)||(471968-472120)
chr8 (180-330)||(44711431-44711582)
chr8 (183-330)||(17106161-17106307)
chr8 (180-269)||(36470657-36470747)
chr8 (202-330)||(14955209-14955338)
chr8 (230-328)||(42350381-42350479)
chr8 (259-330)||(34496930-34497001)
chr8 (243-327)||(20305707-20305791)
chr8 (243-327)||(21092340-21092424)
chr8 (284-330)||(38967824-38967870)
chr8 (263-327)||(32615832-32615896)
[»] chr5 (6 HSPs)
chr5 (180-330)||(1863097-1863248)
chr5 (180-329)||(6539795-6539945)
chr5 (182-329)||(4462555-4462703)
chr5 (243-327)||(19608772-19608856)
chr5 (259-330)||(21044494-21044565)
chr5 (230-308)||(14688740-14688818)
[»] chr4 (11 HSPs)
chr4 (180-329)||(51277947-51278098)
chr4 (180-329)||(14193814-14193964)
chr4 (230-330)||(38868835-38868935)
chr4 (192-330)||(24970948-24971087)
chr4 (180-329)||(53333515-53333665)
chr4 (180-328)||(26683604-26683753)
chr4 (281-328)||(3167230-3167277)
chr4 (259-330)||(24858621-24858692)
chr4 (259-339)||(33881909-33881989)
chr4 (198-330)||(36832803-36832933)
chr4 (243-327)||(41899075-41899159)
[»] chr1 (13 HSPs)
chr1 (184-330)||(1411674-1411820)
chr1 (181-330)||(2570958-2571107)
chr1 (242-327)||(3852831-3852916)
chr1 (198-330)||(28765508-28765641)
chr1 (230-329)||(15280491-15280590)
chr1 (243-327)||(25129878-25129962)
chr1 (243-330)||(36995264-36995351)
chr1 (242-331)||(34620649-34620738)
chr1 (245-330)||(45584317-45584402)
chr1 (242-327)||(48902878-48902963)
chr1 (295-331)||(6180301-6180337)
chr1 (243-327)||(27262774-27262858)
chr1 (295-331)||(35512840-35512876)
[»] chr3 (11 HSPs)
chr3 (180-308)||(31830156-31830285)
chr3 (180-329)||(36473085-36473235)
chr3 (184-280)||(30374674-30374771)
chr3 (263-330)||(41835669-41835736)
chr3 (263-328)||(23070829-23070894)
chr3 (263-330)||(9596298-9596365)
chr3 (243-329)||(45153501-45153587)
chr3 (263-328)||(23057092-23057157)
chr3 (230-330)||(48600603-48600701)
chr3 (243-327)||(1402016-1402100)
chr3 (264-328)||(23073643-23073707)
[»] chr2 (14 HSPs)
chr2 (21-167)||(32273365-32273511)
chr2 (230-328)||(40867915-40868014)
chr2 (198-330)||(752136-752269)
chr2 (211-329)||(41284593-41284712)
chr2 (284-330)||(28331058-28331104)
chr2 (242-307)||(12880101-12880166)
chr2 (243-318)||(19002779-19002854)
chr2 (259-330)||(32838678-32838749)
chr2 (188-323)||(40462057-40462193)
chr2 (255-330)||(8701038-8701113)
chr2 (243-330)||(41311690-41311777)
chr2 (272-330)||(1852827-1852885)
chr2 (180-276)||(40619897-40619993)
chr2 (295-331)||(8065238-8065274)
[»] chr7 (12 HSPs)
chr7 (179-300)||(30824916-30825040)
chr7 (230-330)||(4232726-4232826)
chr7 (211-329)||(31188737-31188856)
chr7 (230-330)||(35720946-35721046)
chr7 (188-329)||(5000329-5000472)
chr7 (199-336)||(43189787-43189926)
chr7 (243-330)||(23797687-23797774)
chr7 (180-329)||(27088296-27088447)
chr7 (180-329)||(27189854-27190005)
chr7 (243-328)||(34963400-34963485)
chr7 (264-318)||(40037731-40037785)
chr7 (230-290)||(35116892-35116952)
[»] chr6 (8 HSPs)
chr6 (179-330)||(21273632-21273785)
chr6 (180-326)||(3686792-3686939)
chr6 (180-329)||(10228307-10228456)
chr6 (255-328)||(31535661-31535734)
chr6 (264-330)||(24093787-24093853)
chr6 (259-328)||(8082503-8082572)
chr6 (244-329)||(29481897-29481982)
chr6 (199-330)||(23578760-23578892)
[»] scaffold0495 (1 HSPs)
scaffold0495 (180-329)||(5026-5175)
[»] scaffold0236 (1 HSPs)
scaffold0236 (243-313)||(20166-20236)
[»] scaffold0019 (1 HSPs)
scaffold0019 (261-322)||(48435-48496)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 21 - 397
Target Start/End: Original strand, 29601865 - 29602236
Alignment:
Q  21 atatatacatttccataactatttattcaactaattaattttactaacttgttgaccagctgctactggtctattacagtttagtatagtaaaagaaaat 120  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29601865 atatatacatttccataaccatttattcaactaattaattttactaacttgttgaccagctgctactggtctattacagtttagtatagtaaaagaaaat 29601964  T
Q  121 gttaattttatgttaatttgttggagtcaggttcattctattctcataatttattattaggtcttgttaaccaatgtccttagggcactagttaagaatt 220  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||    
T  29601965 gttaattttatgttaatttgttgtagtcaggttcattctattctcataatttattattgggtcttgttaaccaatgtccttagggtactagttaaggatt 29602064  T
Q  221 taaatatag-aataatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaa 319  Q
     |||||||| ||||||||| | |||||||||| |||||||||||||||||||||||||| | || ||||||| |||    |||||||||||| |||||||    
T  29602065 caaatatagaaataatttataagttttatgtaaataaatttactttttaaactttcaatatgtcaaatacattatt----agataaaatttcctttttaa 29602160  T
Q  320 acttcttaacatttccctttattattatatatgaaacattgagtaattatatatttgaaaccttatagttttcctttg 397  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29602161 acttcttaatatttccctttattat--tatatgaaacattgagtaattatatatttgaaaccttatagttttcctttg 29602236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 180 - 332
Target Start/End: Original strand, 471968 - 472120
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  471968 ggtcttgttaaccaatgctcttagagcactagttaagaatttaaatatagaaataatttacaagttttatgtagataaagttactttttaaactttcaat 472067  T
Q  279 gtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaacatt 332  Q
    || | ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  472068 gtgttgaatacatcatttccaa-ataaaatttcttttttaaatttcttaacatt 472120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 180 - 330
Target Start/End: Original strand, 44711431 - 44711582
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    |||||||||||| ||| |||||||| ||||||||||  |||||||||||||| || |||||| |||||||||||||||| |||||||||||||||| |||    
T  44711431 ggtcttgttaactaatatccttaggacactagttaaagatttaaatatagaaatactttacaagttttatgtagataaaattactttttaaacttttaat 44711530  T
Q  279 gtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    || | ||||| |||||| |||| |||||||||  ||||||||||||||||||    
T  44711531 gtgttgaatatatcattcccaaaataaaattttctttttaaacttcttaaca 44711582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 183 - 330
Target Start/End: Complemental strand, 17106307 - 17106161
Alignment:
Q  183 cttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaatgta 281  Q
    ||||||||||||||  ||  |||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||     
T  17106307 cttgttaaccaatgctctcggggcactagttaaggattcaaatatagaagtaatttacaagttttatgtagataaagtaactttttaaactttcaatgtg 17106208  T
Q  282 tcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    | |||||| |||   ||||||||||||||| ||||||||||||||||||    
T  17106207 ttgaatacttca--cccaagataaaatttcctttttaaacttcttaaca 17106161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 36470657 - 36470747
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaa 269  Q
    ||||||||||| ||||||||||||| ||||||||||| ||| |||||||||| ||||||||| |||||||||||||||| |||||||||||    
T  36470657 ggtcttgttaagcaatgtccttaggacactagttaaggattcaaatatagaagtaatttacaagttttatgtagataaagttactttttaa 36470747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 330
Target Start/End: Original strand, 14955209 - 14955338
Alignment:
Q  202 agggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaa 300  Q
    |||||||| |||||| ||| ||| |||||| ||| ||| | |||||||  ||| ||| |||||||||||||||||||||| | |||| ||||||||||||    
T  14955209 agggcacttgttaaggattcaaaaatagaaataacttagaagttttataaagaaaaagttactttttaaactttcaatgtgttgaatgcatcatttccaa 14955308  T
Q  301 gataaaatttcttttttaaacttcttaaca 330  Q
    ||||||| ||| | |||||| |||||||||    
T  14955309 gataaaacttcctctttaaaattcttaaca 14955338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 42350479 - 42350381
Alignment:
Q  230 aataatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaa 328  Q
    ||||||||| |  ||||||||||| |||||||||||||||| ||||||||| | |||| |||||||| ||||| |||| || |  ||||||||||||||    
T  42350479 aataatttataaattttatgtagaaaaatttactttttaaattttcaatgtcttgaatgcatcattttcaagacaaaacttttcatttaaacttcttaa 42350381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 34496930 - 34497001
Alignment:
Q  259 ttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    ||||||| |||| |||||||| || |||||||| |||| ||||| |||||||||| ||||||||||||||||    
T  34496930 ttactttataaagtttcaatgcattgaatacataatttacaagacaaaatttcttctttaaacttcttaaca 34497001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 20305791 - 20305707
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttctta 327  Q
    |||| |||||| ||| ||||||||||||||||||||||   || |||| | || ||||||||||| ||| |||||||||||||||    
T  20305791 ttttttgtagaaaaacttactttttaaactttcaatgttatgagtacacccttcccaagataaaacttcctttttaaacttctta 20305707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 21092424 - 21092340
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttctta 327  Q
    |||| |||||| ||| ||||||||||||||||||||||   || |||| | || ||||||||||| ||| |||||||||||||||    
T  21092424 ttttttgtagaaaaacttactttttaaactttcaatgttatgagtacacccttcccaagataaaacttcctttttaaacttctta 21092340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 38967870 - 38967824
Alignment:
Q  284 gaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    |||| ||| |||||| |||||||||||||| ||||||||||||||||    
T  38967870 gaatgcattatttccgagataaaatttcttctttaaacttcttaaca 38967824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 32615896 - 32615832
Alignment:
Q  263 tttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttctta 327  Q
    |||||||  ||||||||| | |||||||  | ||||||||||||||||||  |||||||||||||    
T  32615896 tttttaatgtttcaatgtgttgaatacacgaattccaagataaaatttctactttaaacttctta 32615832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 180 - 330
Target Start/End: Complemental strand, 1863248 - 1863097
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    ||||||||| ||||||| ||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||    
T  1863248 ggtcttgtttaccaatgcccttagggcactagttaaggattcaaatatagaaataatttacaagttttatgtagataaagttactttttaaactttcaat 1863149  T
Q  279 gtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    || | ||||||||||||||||||||||||||| |||||||||||||||||||    
T  1863148 gtgttgaatacatcatttccaagataaaatttattttttaaacttcttaaca 1863097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 329
Target Start/End: Complemental strand, 6539945 - 6539795
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    ||||||| ||||||||| ||| |||||| | |||||||||||||| |||||| ||||||| | |||||||||||| ||  ||||||||||||||||||||    
T  6539945 ggtcttgctaaccaatgccctcagggcaatggttaagaatttaaaaatagaaataatttataagttttatgtagaaaatgttactttttaaactttcaat 6539846  T
Q  279 gtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    || | |||| |||||||| ||| | |||| ||| |||||||||||||||||    
T  6539845 gtcttgaatgcatcattttcaaaacaaaacttcatttttaaacttcttaac 6539795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 182 - 329
Target Start/End: Complemental strand, 4462703 - 4462555
Alignment:
Q  182 tcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaatgt 280  Q
    ||||| ||||||||| ||| |||||| | |||||||||||||| |||||| ||||||| | |||||||||||| ||  |||||||||||||||||||| |    
T  4462703 tcttgctaaccaatgccctcagggcaatggttaagaatttaaaaatagaaataatttataagttttatgtagaaaatgttactttttaaactttcaatat 4462604  T
Q  281 atcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
     | |||| |||||||||||||| |||| ||| |||| ||||||||||||    
T  4462603 cttgaatgcatcatttccaagacaaaacttccttttaaaacttcttaac 4462555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 19608856 - 19608772
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttctta 327  Q
    ||||||||||| ||| |||||||||||  ||||||||| | ||||| |  | |||||||||||| |||| ||||| |||||||||    
T  19608856 ttttatgtagaaaaagttactttttaatgtttcaatgtgttgaatagacaaattccaagataaagtttcctttttgaacttctta 19608772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 21044565 - 21044494
Alignment:
Q  259 ttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    ||||||||||||||||| ||| || |||  || | ||| |||| ||||||||||| ||||||||||||||||    
T  21044565 ttactttttaaactttcgatgcattgaaagcaccgttttcaagttaaaatttcttctttaaacttcttaaca 21044494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 14688818 - 14688740
Alignment:
Q  230 aataatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaat 308  Q
    ||||||||| | |||||||||| | ||| ||| |||||||||||||||||| | ||||  |||||||| |||| |||||    
T  14688818 aataatttataagttttatgtaaaaaaaattagtttttaaactttcaatgtgttgaatgaatcatttctaagacaaaat 14688740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 180 - 329
Target Start/End: Complemental strand, 51278098 - 51277947
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    |||||||||||| |||||||||||||||||||||||  ||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  51278098 ggtcttgttaactaatgtccttagggcactagttaaagattcaaatatagaaataatttacaagttttatgtagataaatttaatttttaaactttcaat 51277999  T
Q  279 gtatcgaa-tacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    || |  || ||||||||||||||||||||||||| |||||||||||||||||    
T  51277998 gtgttaaattacatcatttccaagataaaatttcctttttaaacttcttaac 51277947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 329
Target Start/End: Original strand, 14193814 - 14193964
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    ||||||| ||||||||| ||| |||||| | |||||||||||||| ||| || ||||||| |  ||||||||||| ||  ||||||||||||||||||||    
T  14193814 ggtcttgctaaccaatgccctcagggcaatggttaagaatttaaaaataaaaataatttataaattttatgtagaaaatgttactttttaaactttcaat 14193913  T
Q  279 gtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    || | |||| |||||||||| |||||||| ||| |||||||||||||||||    
T  14193914 gtcttgaatgcatcatttccgagataaaacttcctttttaaacttcttaac 14193964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 38868935 - 38868835
Alignment:
Q  230 aataatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    ||||||||| | |||||||||||| ||| |||||||||||||||||||||| | |||| ||||||| |||||| |||||||| | |||| | ||||||||    
T  38868935 aataatttataagttttatgtagaaaaagttactttttaaactttcaatgtgttgaatgcatcattcccaagacaaaatttcctctttagatttcttaac 38868836  T
Q  330 a 330  Q
    |    
T  38868835 a 38868835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 330
Target Start/End: Complemental strand, 24971087 - 24970948
Alignment:
Q  192 caatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaataca 290  Q
    ||||||| |||||| |  ||||||| ||| ||| |||||| |||||||||  ||| ||| ||| ||  ||||||||||||||||||||||    ||||||    
T  24971087 caatgtctttagggtataagttaaggattcaaaaatagaagtaatttacaaatttcatgcagaaaaggttactttttaaactttcaatgtgcttaataca 24970988  T
Q  291 tcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    |||||| ||||| |||||||| | ||||||||||||||||    
T  24970987 tcattttcaagacaaaatttcctctttaaacttcttaaca 24970948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 329
Target Start/End: Original strand, 53333515 - 53333665
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatat-agaataatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    ||||||| ||||||||||||| ||| || | |||||||||||||| || | ||||||||| |  ||| ||||||| ||| |||||||||||||||| |||    
T  53333515 ggtcttgctaaccaatgtcctcaggacaatggttaagaatttaaaaataaaaataatttataaatttcatgtagaaaaagttactttttaaacttttaat 53333614  T
Q  279 gtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
     | | |||| ||| ||||| || ||| || ||  |||||| ||||||||||    
T  53333615 atcttgaatgcattatttctaaaatagaactttctttttacacttcttaac 53333665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 328
Target Start/End: Original strand, 26683604 - 26683753
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    ||||||| ||||||||| ||| | || | | |||||| ||||||| || ||| ||||||| |  ||||||||||| ||  |||||||||||| |||||||    
T  26683604 ggtcttgctaaccaatgccctcatggtaatggttaaggatttaaaaatggaaataatttataaattttatgtagaaaatattactttttaaattttcaat 26683703  T
Q  279 gtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaa 328  Q
    || | |||| ||| |||| ||||| |||| |||  ||||| |||||||||    
T  26683704 gtcttgaatgcattattttcaagacaaaacttcccttttagacttcttaa 26683753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 3167230 - 3167277
Alignment:
Q  281 atcgaatacatcatttccaagataaaatttcttttttaaacttcttaa 328  Q
    ||||||| || ||||| ||| |||||||||||||||||||||||||||    
T  3167230 atcgaatgcaccattttcaaaataaaatttcttttttaaacttcttaa 3167277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 24858692 - 24858621
Alignment:
Q  259 ttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    |||||||||||| |||||||| || |||| |||||||||||||| ||| |||||   ||| |||||||||||    
T  24858692 ttactttttaaaatttcaatgcattgaatgcatcatttccaagacaaagtttctacgttagacttcttaaca 24858621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 33881909 - 33881989
Alignment:
Q  259 ttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaacatttcccttt 339  Q
    |||||||||||| ||||||||| | |||||||  |||| ||||| |||||||||| |||   ||||| | |||||||||||    
T  33881909 ttactttttaaaatttcaatgtgttgaatacacaattttcaagagaaaatttcttctttgggcttctcagcatttcccttt 33881989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 330
Target Start/End: Original strand, 36832803 - 36832933
Alignment:
Q  198 ccttagggcactagttaagaatttaaatatagaataatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttc 297  Q
    ||||||||||| ||||||||| | ||||| | ||||| ||| |  ||||||||||| ||| ||  |||||||  ||||||||||| |||| ||||||||     
T  36832803 ccttagggcacaagttaagaactcaaataga-aataaattataaattttatgtagaaaaagttcatttttaag-tttcaatgtattgaatgcatcatttt 36832900  T
Q  298 caagataaaatttcttttttaaacttcttaaca 330  Q
     |||||||| ||||| |||| | ||| ||||||    
T  36832901 taagataaactttctcttttgagctttttaaca 36832933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 327
Target Start/End: Complemental strand, 41899159 - 41899075
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttctta 327  Q
    ||||| ||||| ||| |||| ||||||| |||||||| || |||| || ||||||||||| || ||||||| ||||  |||||||    
T  41899159 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaatatttcttctttagtcttctta 41899075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 184 - 330
Target Start/End: Complemental strand, 1411820 - 1411674
Alignment:
Q  184 ttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaatgtat 282  Q
    ||||||||||||||||||| ||||||||||||  ||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |    
T  1411820 ttgttaaccaatgtccttaaggcactagttaaagattcaaatatagaagtaatttacaagttttatgtagataaatt-actttttaaactttcaatgtgt 1411722  T
Q  283 cgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
     |||||||||||| | ||||||||||||| ||||||||||||||||||    
T  1411721 tgaatacatcattcctaagataaaatttcctttttaaacttcttaaca 1411674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 181 - 330
Target Start/End: Original strand, 2570958 - 2571107
Alignment:
Q  181 gtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaatg 279  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||| | ||| |||||||| ||||||||    
T  2570958 gtcttgttaaccaatgcccttagggcactagttaaggattcaaatatagaaataatttacaagttttatgtagatatagtta-tttttaaagtttcaatg 2571056  T
Q  280 tatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    | | |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  2571057 tgttgaatacatcattcccaagataaaatttcctttttaaacttcttaaca 2571107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 3852916 - 3852831
Alignment:
Q  242 gttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttctta 327  Q
    ||||||||||||||||||||| ||||||||||||||| || ||||||||||||| | ||||||||||||  |||||||| ||||||    
T  3852916 gttttatgtagataaatttaccttttaaactttcaatataccgaatacatcattcctaagataaaattttctttttaaatttctta 3852831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 330
Target Start/End: Original strand, 28765508 - 28765641
Alignment:
Q  198 ccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcattt 296  Q
    |||||| |||||||||||| ||| ||| |||||| |||||||||  ||||| | |||  || |||||||||||||||||||||| | |||||||||||||    
T  28765508 ccttagagcactagttaaggattaaaaaatagaagtaatttacaaattttacgcagaataaattactttttaaactttcaatgtgttgaatacatcattt 28765607  T
Q  297 ccaagataaaatttcttttttaaacttcttaaca 330  Q
    | |||  |||||||  | ||||||||| ||||||    
T  28765608 ctaaggcaaaattttctctttaaactttttaaca 28765641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 329
Target Start/End: Original strand, 15280491 - 15280590
Alignment:
Q  230 aataatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    ||||||||| |  ||||||||| | ||  ||| |||||||||||||||| | | || | ||||||||| ||||||||| ||| |||||||||||||||||    
T  15280491 aataatttataaattttatgtaaaaaatgttattttttaaactttcaatatcttgagtgcatcatttctaagataaaacttcctttttaaacttcttaac 15280590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 25129878 - 25129962
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttctta 327  Q
    ||||| ||||| ||| |||| ||||||| |||||||| || |||| || |||||||||||||| ||||||| ||||  |||||||    
T  25129878 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagataacatttcttctttagtcttctta 25129962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 330
Target Start/End: Original strand, 36995264 - 36995351
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    ||||| ||||| ||| ||||||| |||| |||||||| || |||| || ||||||||| | |||||||||| |||  |||||||||||    
T  36995264 ttttaagtagaaaaagttactttataaaatttcaatgcattgaatgcaccatttccaaaacaaaatttcttctttggacttcttaaca 36995351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 34620649 - 34620738
Alignment:
Q  242 gttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaacat 331  Q
    |||||||||||| ||| ||||||||| || ||||||||| | |||| ||||| | ||||||  || |||||| ||||  |||||||||||    
T  34620649 gttttatgtagaaaaaattactttttcaagtttcaatgtgttgaatgcatcaatcccaagacgaactttcttctttaggcttcttaacat 34620738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 45584402 - 45584317
Alignment:
Q  245 ttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    ||||||| | ||| ||| |||||||| || ||||| || |||||||| |||| ||||||| | |||||| |||| |||||||||||    
T  45584402 ttatgtaaaaaaagttattttttaaagttccaatgcattgaatacataattttcaagatatagtttcttctttagacttcttaaca 45584317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 48902878 - 48902963
Alignment:
Q  242 gttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttctta 327  Q
    |||||||||||  ||| ||| |||||||| || |||||| | ||||||| |||| | ||||||||||||||| |||  ||||||||    
T  48902878 gttttatgtagcaaaagttattttttaaagttccaatgttttgaatacaccattcctaagataaaatttcttcttttgacttctta 48902963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 6180301 - 6180337
Alignment:
Q  295 ttccaagataaaatttcttttttaaacttcttaacat 331  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  6180301 ttccaatataaaatttctattttaaacttcttaacat 6180337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 27262774 - 27262858
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttctta 327  Q
    ||||||||||| ||| |||||||||||  ||| ||||| | |||||||  | ||| |||| ||||||||  ||||||||||||||    
T  27262774 ttttatgtagaaaaaattactttttaatgttttaatgtgttgaatacacaaattctaagacaaaatttccattttaaacttctta 27262858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 35512840 - 35512876
Alignment:
Q  295 ttccaagataaaatttcttttttaaacttcttaacat 331  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  35512840 ttccaatataaaatttctattttaaacttcttaacat 35512876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 180 - 308
Target Start/End: Original strand, 31830156 - 31830285
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    ||||||||||||||||| ||||||||| ||||||||| ||| |||||||||| ||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  31830156 ggtcttgttaaccaatgcccttagggctctagttaaggattcaaatatagaaataatttacaagttttatgtagacaaagttactttttaaactttcaat 31830255  T
Q  279 gtatcgaatacatcatttccaagataaaat 308  Q
    || | ||||| ||||||  |||||||||||    
T  31830256 gtgttgaatatatcattcgcaagataaaat 31830285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 329
Target Start/End: Original strand, 36473085 - 36473235
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    ||||||| ||||| ||| ||| |||||| | |||||||||||||| |||||| ||||||| |  ||||||||||| ||  ||||||||||| ||||||||    
T  36473085 ggtcttgctaaccgatgccctcagggcaatggttaagaatttaaaaatagaaataatttataaattttatgtagaaaatgttactttttaatctttcaat 36473184  T
Q  279 gtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    || | |||| |||||||||| ||| |||| ||| ||||| |||||||||||    
T  36473185 gtcttgaatgcatcatttcctagacaaaacttccttttttaacttcttaac 36473235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 30374771 - 30374674
Alignment:
Q  184 ttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaatgt 280  Q
    ||||||||||||| |||||||||| || ||||  ||| |||||||||| ||||||||| ||||||| |||||||  |||||||||||||||| |||||    
T  30374771 ttgttaaccaatgcccttagggcattaattaaagattcaaatatagaaataatttacaagttttatatagataaggttactttttaaacttttaatgt 30374674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 41835669 - 41835736
Alignment:
Q  263 tttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    |||||||| |||||||| ||| ||||||||||||  ||||||||||||||| ||||||||||||||||    
T  41835669 tttttaaagtttcaatgcatcaaatacatcattttaaagataaaatttcttctttaaacttcttaaca 41835736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 23070894 - 23070829
Alignment:
Q  263 tttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaa 328  Q
    |||||||| |||||||  || |||||||||| || |||||||||||||||| |||| |||||||||    
T  23070894 tttttaaaatttcaattcattgaatacatcaattacaagataaaatttcttctttagacttcttaa 23070829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 330
Target Start/End: Complemental strand, 9596365 - 9596298
Alignment:
Q  263 tttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    |||||||| |||||  || | ||||||||||| || |||||||| |||||||||||| ||||||||||    
T  9596365 tttttaaagtttcatggtgttgaatacatcatctctaagataaactttcttttttaagcttcttaaca 9596298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 329
Target Start/End: Complemental strand, 45153587 - 45153501
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    ||||| ||||| ||| ||||||| |||| |||||||| || |||| || ||||| ||||||||||||| || |||| | ||||||||    
T  45153587 ttttaagtagaaaaagttactttataaagtttcaatgcattgaatgcaccattttcaagataaaatttattctttagaattcttaac 45153501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 23057157 - 23057092
Alignment:
Q  263 tttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaa 328  Q
    |||||||| ||| |||  || |||||||||| || || ||||||||||||| ||||||||||||||    
T  23057157 tttttaaagttttaattcattgaatacatcaattacacgataaaatttcttctttaaacttcttaa 23057092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 48600701 - 48600603
Alignment:
Q  230 aataatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    ||||||||| |  ||||| ||||| ||| |||||||||||| ||||||||||| ||  |||| |||| ||||| ||| ||||||||||  |||||| |||    
T  48600701 aataatttataaattttacgtagaaaaaattactttttaaagtttcaatgtattga--acataattttcaagaaaaagtttcttttttggacttctaaac 48600604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 1402016 - 1402100
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttctta 327  Q
    ||||| ||||| ||| |||| ||||||| |||||||| || |||| || ||||||||||| || ||||||| ||||  |||||||    
T  1402016 ttttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttctta 1402100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 328
Target Start/End: Complemental strand, 23073707 - 23073643
Alignment:
Q  264 ttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaa 328  Q
    ||||||| |||||||  || ||||||| || || ||||||||||||||||||||| |||| ||||    
T  23073707 ttttaaagtttcaattcattgaatacaccaattacaagataaaatttcttttttagactttttaa 23073643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 167
Target Start/End: Complemental strand, 32273511 - 32273365
Alignment:
Q  21 atatatacatttccataactatttattcaactaattaattttactaacttgttgaccagctgctactggtctattacagtttagtatagtaaaagaaaat 120  Q
    |||||||||||| ||||||||| |||||||||   |||||||||| |||| |||||||||||| || || |||||||||||| ||||||| |||||||||    
T  32273511 atatatacattttcataactatatattcaactggctaattttactcacttattgaccagctgccaccgggctattacagtttggtatagtgaaagaaaat 32273412  T
Q  121 gttaattttatgttaatttgttggagtcaggttcattctattctcat 167  Q
      | | ||||||||||| ||||| ||| |||||||| ||||||||||    
T  32273411 acttactttatgttaatctgttgtagttaggttcatactattctcat 32273365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 40868014 - 40867915
Alignment:
Q  230 aataatttacatgttttatgtagataaa-tttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaa 328  Q
    ||||||||||| |||||||  ||| ||| |||| |||||||||||||||||| | |||||||||||||  |||| |||| ||| ||||||||||||||||    
T  40868014 aataatttacaagttttataaagaaaaaatttaatttttaaactttcaatgtgttgaatacatcattttaaagacaaaacttcatttttaaacttcttaa 40867915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 330
Target Start/End: Original strand, 752136 - 752269
Alignment:
Q  198 ccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcattt 296  Q
    |||||||||||| ||||||||||  || |||||| |||||     |||||||||||| ||| ||||||||| || ||||||||| | |||| ||||| |     
T  752136 ccttagggcacttgttaagaattctaaaatagaaataattggttagttttatgtagaaaaaattactttttcaagtttcaatgtgttgaatgcatcaatc 752235  T
Q  297 ccaagataaaatttcttttttaaacttcttaaca 330  Q
    |||||| |||||||||| |||| |||||||||||    
T  752236 ccaagacaaaatttcttctttagacttcttaaca 752269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 41284593 - 41284712
Alignment:
Q  211 gttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatt 309  Q
    |||||| ||||||| |||||| ||||||| |  ||||||||||| |   |||||||||||||||||| ||| | |||| ||||||||| |||| |||| |    
T  41284593 gttaaggatttaaaaatagaaataatttataaattttatgtagaaagtgttactttttaaactttcagtgtcttgaatgcatcatttctaagacaaaact 41284692  T
Q  310 tcttttttaaacttcttaac 329  Q
    | ||||||| ||||||||||    
T  41284693 ttttttttagacttcttaac 41284712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 28331104 - 28331058
Alignment:
Q  284 gaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  28331104 gaatacaccatttccaagataaaatttctcttttaaacttcttaaca 28331058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 12880166 - 12880101
Alignment:
Q  242 gttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaa 307  Q
    |||||||||||| ||| |||||||||||| ||||||||| | ||||||| | ||||||||||||||    
T  12880166 gttttatgtagaaaaaattactttttaaaatttcaatgtgttgaatacaccgtttccaagataaaa 12880101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 19002779 - 19002854
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttctttttta 318  Q
    ||||| ||||| |||||||||||||||| |||||||| || |||| || ||||||||||| ||| |||||| ||||    
T  19002779 ttttaagtagaaaaatttactttttaaaatttcaatgcattgaatgcaccatttccaagacaaagtttcttcttta 19002854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 330
Target Start/End: Original strand, 32838678 - 32838749
Alignment:
Q  259 ttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    |||| ||||||| |||||||| || |||| |||||||||||||| |||||||||| |||||  |||||||||    
T  32838678 ttacattttaaagtttcaatgcattgaatgcatcatttccaagacaaaatttcttctttaattttcttaaca 32838749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 323
Target Start/End: Original strand, 40462057 - 40462193
Alignment:
Q  188 taaccaatgtccttagggcactagttaagaatttaaatatagaat-aatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaa 286  Q
    |||||||| |||||||| ||||| ||||  ||||||| ||||||  |||||| | |||||||||||| ||| |||||||||||| ||  ||| | | |||    
T  40462057 taaccaatatccttaggacactaattaaagatttaaaaatagaagcaatttataagttttatgtagaaaaaattactttttaaatttctaatatcttgaa 40462156  T
Q  287 tacatcatttccaagataaaatttcttttttaaactt 323  Q
    || ||||||  ||||| |||||||  | |||||||||    
T  40462157 tatatcattctcaagacaaaattttctctttaaactt 40462193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 330
Target Start/End: Complemental strand, 8701113 - 8701038
Alignment:
Q  255 aaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    ||||||||||||||   ||| ||||| | |||||||| ||||  |||||||||||| | |||||||||||||||||    
T  8701113 aaatttactttttattgttttaatgtgttgaatacataatttttaagataaaatttttattttaaacttcttaaca 8701038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 41311777 - 41311690
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    ||||||||||| ||| |||||||||||||||||||| | |  ||| ||| |||| ||| | |||||||  | ||||||||||||||||    
T  41311777 ttttatgtagaaaaaattactttttaaactttcaatttgttaaatgcataattttcaaaacaaaattttctctttaaacttcttaaca 41311690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 1852885 - 1852827
Alignment:
Q  272 tttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    ||||||| ||| || ||||| |||||||||||||| ||||| |||| ||||||||||||    
T  1852885 tttcaatatattgattacataatttccaagataaagtttctattttgaacttcttaaca 1852827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 40619993 - 40619897
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatag-aataatttacatgttttatgtagataaatttactttttaaactttca 276  Q
    |||||||||||||| ||||||||||||| | |||||| ||||||| || | |||||  || | |||||||||| | |||  |||||||||||||||||    
T  40619993 ggtcttgttaaccattgtccttagggcaatggttaaggatttaaaaatggtaataa-atataagttttatgtacaaaaagctactttttaaactttca 40619897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 8065238 - 8065274
Alignment:
Q  295 ttccaagataaaatttcttttttaaacttcttaacat 331  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  8065238 ttccaatataaaatttctattttaaacttcttaacat 8065274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 179 - 300
Target Start/End: Complemental strand, 30825040 - 30824916
Alignment:
Q  179 aggtcttgttaaccaatgtccttag--ggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttc 275  Q
    ||||||| |||||||||| ||||||  ||||||||||||  ||| |||||||||| ||||||||| |||||||| ||||||| |||||||||||| ||||    
T  30825040 aggtcttattaaccaatgcccttagagggcactagttaaagattcaaatatagaaataatttacaagttttatgcagataaagttactttttaaattttc 30824941  T
Q  276 aatgtatcgaatacatcatttccaa 300  Q
    ||||| | |||||||||||||||||    
T  30824940 aatgtgttgaatacatcatttccaa 30824916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 4232826 - 4232726
Alignment:
Q  230 aataatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    ||||||||||| ||||||| |||||||| |||||||||||||||||||||| | ||||||||||||   ||||||||||||  |||||||||||||||||    
T  4232826 aataatttacaagttttatatagataaaattactttttaaactttcaatgtgttgaatacatcattcttaagataaaattttatttttaaacttcttaac 4232727  T
Q  330 a 330  Q
    |    
T  4232726 a 4232726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 31188737 - 31188856
Alignment:
Q  211 gttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatt 309  Q
    |||||||||||||| ||| || ||||||| | |||||||||||| ||  |||||||||||||||||||||| | |||| |||||||| ||||| |||| |    
T  31188737 gttaagaatttaaaaataaaaataatttataagttttatgtagaaaatgttactttttaaactttcaatgtcttgaatgcatcattttcaagacaaaact 31188836  T
Q  310 tcttttttaaacttcttaac 329  Q
    || |||||||||||||||||    
T  31188837 tcctttttaaacttcttaac 31188856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 330
Target Start/End: Complemental strand, 35721046 - 35720946
Alignment:
Q  230 aataatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    |||| ||||||  ||||||||||||||| |||||||||||||||||||| | | |||| ||||||| |||| |||||||||  |||||||||||||||||    
T  35721046 aatagtttacaaattttatgtagataaagttactttttaaactttcaatatgttgaatgcatcattcccaaaataaaattttctttttaaacttcttaac 35720947  T
Q  330 a 330  Q
    |    
T  35720946 a 35720946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 329
Target Start/End: Complemental strand, 5000472 - 5000329
Alignment:
Q  188 taaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaat-ttactttttaaactttcaatgtatcga 285  Q
    ||||||||| ||| |||||| |  ||||| ||||||| |||||| ||||||| | |||||||||| | |||| |||||||||||||||||||||| | ||    
T  5000472 taaccaatgccctcagggcaatgtttaaggatttaaaaatagaaataatttataagttttatgtaaaaaaatgttactttttaaactttcaatgtcttga 5000373  T
Q  286 atacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    || |||||||||||||| |||| |||  ||||| ||||||||||    
T  5000372 atgcatcatttccaagacaaaacttccattttagacttcttaac 5000329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 336
Target Start/End: Complemental strand, 43189926 - 43189787
Alignment:
Q  199 cttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaat-ttactttttaaactttcaatgtatcgaatacatcattt 296  Q
    |||||||||||||||||  ||| ||| |||||| ||||||| |  ||||||||| | |||  |||||||||||| ||||||||||| || |||||||||     
T  43189926 cttagggcactagttaacgattcaaaaatagaagtaatttataaattttatgtaaaaaaaagttactttttaaattttcaatgtattgactacatcattc 43189827  T
Q  297 ccaagataaaatttcttttttaaacttcttaacatttccc 336  Q
     |||||||||||||| | | ||||||||||||||||||||    
T  43189826 tcaagataaaatttcctatgtaaacttcttaacatttccc 43189787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 23797774 - 23797687
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    ||||| ||||| ||| |||||||||||| ||| ||||||| |||||||||||| ||||||||||||||  | ||||||||||||||||    
T  23797774 ttttaggtagaaaaaattactttttaaatttttaatgtattgaatacatcattcccaagataaaattttctctttaaacttcttaaca 23797687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 329
Target Start/End: Complemental strand, 27088447 - 27088296
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataa-atttactttttaaactttcaa 277  Q
    ||||||| ||| ||||||||| | |||| | ||||| |||||||| |||||| || |||| | |||||||||||| || |||||||||||||||||||||    
T  27088447 ggtcttgctaatcaatgtcctcatggcaatggttaataatttaaaaatagaaatattttataagttttatgtagaaaatatttactttttaaactttcaa 27088348  T
Q  278 tgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    ||| | ||||  || |||||||||| |||| ||| |||||||| || |||||    
T  27088347 tgtcttgaatgtattatttccaagacaaaacttcctttttaaaatttttaac 27088296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 329
Target Start/End: Original strand, 27189854 - 27190005
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataa-atttactttttaaactttcaa 277  Q
    ||||||| ||| ||||||||| | |||| | ||||| |||||||| |||||| || |||| | |||||||||||| || |||||||||||||||||||||    
T  27189854 ggtcttgctaatcaatgtcctcatggcaatggttaataatttaaaaatagaaatattttataagttttatgtagaaaatatttactttttaaactttcaa 27189953  T
Q  278 tgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    ||| | ||||  || |||||||||| |||| ||| |||||||| || |||||    
T  27189954 tgtcttgaatgtattatttccaagacaaaacttcctttttaaaatttttaac 27190005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 328
Target Start/End: Original strand, 34963400 - 34963485
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaa 328  Q
    ||||| ||||| ||| | |||||| ||| |||  ||| || |||| || ||||||||||||||||||| |||||||||||||||||    
T  34963400 ttttaagtagaaaaagtcacttttcaaagttttcatgcattgaatgcaccatttccaagataaaatttattttttaaacttcttaa 34963485  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 40037785 - 40037731
Alignment:
Q  264 ttttaaactttcaatgtatcgaatacatcatttccaagataaaatttctttttta 318  Q
    ||||||| |||||||| || ||||| |||||||  ||||||||||||||||||||    
T  40037785 ttttaaagtttcaatgcattgaatatatcatttttaagataaaatttctttttta 40037731  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 35116952 - 35116892
Alignment:
Q  230 aataatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaataca 290  Q
    ||||||||| |  ||||||||||| |||||| |||||| || ||||||||||| |||||||    
T  35116952 aataatttataaattttatgtagaaaaatttcctttttgaagtttcaatgtattgaataca 35116892  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 330
Target Start/End: Original strand, 21273632 - 21273785
Alignment:
Q  179 aggtcttgttaaccaatgtccttagggcactagttaagaatttaa-atatagaa-taatttacatgttttatgtagataaatttactttttaaactttca 276  Q
    |||||||| |||||| ||| |||||| || |||||||| ||| || | |||||| |||||||||  |||| |||||||||| |||||||||||||||||     
T  21273632 aggtcttgctaaccagtgttcttaggacattagttaaggattcaacaaatagaaataatttacaaattttgtgtagataaagttactttttaaactttcc 21273731  T
Q  277 atgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    |||| | ||||||||| || |||||||||||||   | ||||||||| ||||||    
T  21273732 atgtgttgaatacatcgttcccaagataaaattatctctttaaactttttaaca 21273785  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 326
Target Start/End: Complemental strand, 3686939 - 3686792
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    ||||||| ||| ||||| |||  ||||| | |||||||||||||| |||||| ||||||| | ||||||||| || ||   || ||||||||||||||||    
T  3686939 ggtcttgctaagcaatgccctcggggcaatggttaagaatttaaaaatagaaataatttataagttttatgtcgaaaatgctattttttaaactttcaat 3686840  T
Q  279 gtatcgaatacatcatttccaagataaaatttcttttttaaacttctt 326  Q
     | | |||| |||||||||||||| |||| ||| ||||||||||||||    
T  3686839 atcttgaatgcatcatttccaagacaaaacttcatttttaaacttctt 3686792  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 329
Target Start/End: Complemental strand, 10228456 - 10228307
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatat-agaataatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    ||||||| |||||| |||  | |||||| | |||||||||||||| || | ||||||||| |  |||| |||||| ||| |||||||| ||||||| |||    
T  10228456 ggtcttgctaaccagtgttttcagggcaatggttaagaatttaaaaatgaaaataatttataaattttttgtagaaaaaattactttt-aaacttttaat 10228358  T
Q  279 gtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    || | |||| |||||||||||||| |||| ||| |||||||| ||||||||    
T  10228357 gtcttgaatgcatcatttccaagaaaaaacttcctttttaaatttcttaac 10228307  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 31535734 - 31535661
Alignment:
Q  255 aaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaa 328  Q
    |||||||||||||||||||||||||| |  ||| |||||||||||||||||||  | || ||||||||| ||||    
T  31535734 aaatttactttttaaactttcaatgtgttaaatgcatcatttccaagataaaaaattttctttaaactttttaa 31535661  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 24093853 - 24093787
Alignment:
Q  264 ttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaaca 330  Q
    ||||||| |||||| || | |||||||||||| |||||||||| ||||| |||||| ||||||||||    
T  24093853 ttttaaagtttcaaggtgttgaatacatcattcccaagataaactttctcttttaagcttcttaaca 24093787  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 8082503 - 8082572
Alignment:
Q  259 ttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaa 328  Q
    |||||||||||| |||||||| ||  ||| || ||||| ||||| |||||||||| |||| |||||||||    
T  8082503 ttactttttaaagtttcaatgcatttaatgcaccattttcaagacaaaatttcttatttagacttcttaa 8082572  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 29481897 - 29481982
Alignment:
Q  244 tttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    |||||||| ||||  |||||||||||| |||||||  || |||| ||||||||  |||||||| ||| || |||||| ||||||||    
T  29481897 tttatgtaaataatgttactttttaaagtttcaatacattgaatgcatcatttttaagataaatttttttctttaaatttcttaac 29481982  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 330
Target Start/End: Complemental strand, 23578892 - 23578760
Alignment:
Q  199 cttagggcactagttaagaatttaaatatagaa-taatttacatgttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttc 297  Q
    ||||||||||| |||||  ||||||| |||||| ||| | | |  ||||||||  | ||| ||||| |||||| ||| |||| || ||  ||| |||||     
T  23578892 cttagggcacttgttaaagatttaaaaatagaaataaataataaattttatgtttaaaaagttactatttaaaattttaatgcattgacaacaccatttt 23578793  T
Q  298 caagataaaatttcttttttaaacttcttaaca 330  Q
    ||| |||||||||||| ||||||||||||||||    
T  23578792 caaaataaaatttcttctttaaacttcttaaca 23578760  T

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Target: scaffold0495 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 329
Target Start/End: Complemental strand, 5175 - 5026
Alignment:
Q  180 ggtcttgttaaccaatgtccttagggcactagttaagaatttaaatat-agaataatttacatgttttatgtagataaatttactttttaaactttcaat 278  Q
    ||||||| |||||| |||  | |||||| | |||||||||||||| || | ||||||||| |  |||| |||||| ||| |||||||| ||  ||| |||    
T  5175 ggtcttgctaaccagtgttttcagggcaatggttaagaatttaaaaatgaaaataatttataaatttt-tgtagaaaaaattacttttaaacttttaaat 5077  T
Q  279 gtatcgaatacatcatttccaagataaaatttcttttttaaacttcttaac 329  Q
    || | |||| |||||||||||||| |||| ||| |||||||| ||||||||    
T  5076 gtcttgaatgcatcatttccaagaaaaaacttcctttttaaatttcttaac 5026  T

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Target: scaffold0236 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 20236 - 20166
Alignment:
Q  243 ttttatgtagataaatttactttttaaactttcaatgtatcgaatacatcatttccaagataaaatttctt 313  Q
    ||||| ||||| ||| ||| |||||||| ||||||| ||| ||||  ||||||||||||| ||||||||||    
T  20236 ttttaagtagaaaaagttattttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttctt 20166  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 48435 - 48496
Alignment:
Q  261 actttttaaactttcaatgtatcgaatacatcatttccaagataaaatttcttttttaaact 322  Q
    |||||||||||||| ||| ||| |||| |||||||||||| | ||| |||| ||||||||||    
T  48435 actttttaaacttttaatatattgaatgcatcatttccaatacaaattttcatttttaaact 48496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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