View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18713_low_3 (Length: 376)
Name: NF18713_low_3
Description: NF18713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18713_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 112 - 364
Target Start/End: Complemental strand, 53884849 - 53884601
Alignment:
| Q |
112 |
ccgtccccgccgctagatttgtaaccaactacaactacgcgtatcccgacccttccttcatttcttctctattccttcctatttggttaattcctattcc |
211 |
Q |
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|||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
53884849 |
ccgtacccgccgctagatttgtaac----tacatctacgcgtatcccgacccttccttcatttcttctatattccttcctatttgtttaattcctattcc |
53884754 |
T |
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| Q |
212 |
aagcttctgttattattgccaccattttttcaaaccttcaatttcaaccacgaccatgcctcctcatcatcaccatggcgatcctgaacaaccaaaatca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53884753 |
aagcttctgttattattgccaccattttttcaaaccttcaatttcaaccacgaccatgcctcctcatcatcaccatggcgatcctgaacaaccaaaacca |
53884654 |
T |
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| Q |
312 |
aaccctaatctcctctccctattcctcaaacccatcatcatgcttcatctcac |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53884653 |
aaccctaatctcctctccctattcctcaaacccatcatcatgcttcttctcac |
53884601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 112 - 364
Target Start/End: Complemental strand, 53890963 - 53890715
Alignment:
| Q |
112 |
ccgtccccgccgctagatttgtaaccaactacaactacgcgtatcccgacccttccttcatttcttctctattccttcctatttggttaattcctattcc |
211 |
Q |
| |
|
|||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
53890963 |
ccgtacccgccgctagatttgtaac----tacatctacgcgtatcccgacccttccttcatttcttctatattccttcctatttgtttaattcctattcc |
53890868 |
T |
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| Q |
212 |
aagcttctgttattattgccaccattttttcaaaccttcaatttcaaccacgaccatgcctcctcatcatcaccatggcgatcctgaacaaccaaaatca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53890867 |
aagcttctgttattattgccaccattttttcaaaccttcaatttcaaccacgaccatgcctcctcatcatcaccatggcgatcctgaacaaccaaaacca |
53890768 |
T |
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| Q |
312 |
aaccctaatctcctctccctattcctcaaacccatcatcatgcttcatctcac |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53890767 |
aaccctaatctcctctccctattcctcaaacccatcatcatgcttcttctcac |
53890715 |
T |
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