View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18713_low_4 (Length: 320)

Name: NF18713_low_4
Description: NF18713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18713_low_4
NF18713_low_4
[»] chr3 (17 HSPs)
chr3 (19-115)||(6798149-6798245)
chr3 (169-247)||(6797831-6797909)
chr3 (168-247)||(6785214-6785294)
chr3 (15-100)||(6934625-6934712)
chr3 (269-302)||(6782655-6782688)
chr3 (269-302)||(6941609-6941642)
chr3 (269-302)||(6944722-6944755)
chr3 (175-211)||(6940604-6940640)
chr3 (176-232)||(6943772-6943827)
chr3 (269-300)||(6242990-6243021)
chr3 (175-218)||(6451611-6451654)
chr3 (177-232)||(7584603-7584660)
chr3 (269-302)||(6557041-6557074)
chr3 (269-302)||(6733344-6733377)
chr3 (269-302)||(6944941-6944974)
chr3 (269-302)||(7585544-7585577)
chr3 (175-211)||(6549015-6549051)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 6798245 - 6798149
Alignment:
Q  19 tttcttagtcttcccaaaaaattgatttgttcatcctcaaatttgcacactgaaatggctgaaagtgaattgaaatttatttgcaccatgcatcaaa 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  6798245 tttcatagtcttcccaaaaaattgatttgttcatcctcaaatttgaacactgaaatgactgaaagtgaattgaaatttatttgaaccatacatcaaa 6798149  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 6797909 - 6797831
Alignment:
Q  169 attcaactgcatttttcaaagtaaaatatatttcatgattcaaatgagcaatatgataaaacttcaaaatacaatatta 247  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||| ||||    
T  6797909 attcaactgaatttttcaaagtaaaatatattttatgattcaaatgagcaatataataaaacattaaaatacaacatta 6797831  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 6785294 - 6785214
Alignment:
Q  168 cattcaactgcatttttcaaagtaaaatatattt-catgattcaaatgagcaatatgataaaacttcaaaatacaatatta 247  Q
    ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||| ||||||||| ||||||||| ||||    
T  6785294 cattcaactgcatttttcaaagtaaaatatatttatatgatttaaatgagcaatataataaaactttaaaatacaacatta 6785214  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 6934625 - 6934712
Alignment:
Q  15 tcattttcttagtcttcccaaaaaa-ttgattt-gttcatcctcaaatttgcacactgaaatggctgaaagtgaattgaaatttattt 100  Q
    |||||| | |||||||||||||||| ||||||| |||||  |||||||||| ||||| |||  |||||||||||| ||||||||||||    
T  6934625 tcatttgcatagtcttcccaaaaaaattgattttgttcaatctcaaatttggacactaaaacagctgaaagtgaactgaaatttattt 6934712  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 6782688 - 6782655
Alignment:
Q  269 ggatgtgacaaattgtatgccaacgctctcctcc 302  Q
    ||||||||||||||||||||||||||||||||||    
T  6782688 ggatgtgacaaattgtatgccaacgctctcctcc 6782655  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 6941609 - 6941642
Alignment:
Q  269 ggatgtgacaaattgtatgccaacgctctcctcc 302  Q
    ||||||||||||||||||||||||||||||||||    
T  6941609 ggatgtgacaaattgtatgccaacgctctcctcc 6941642  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 6944722 - 6944755
Alignment:
Q  269 ggatgtgacaaattgtatgccaacgctctcctcc 302  Q
    ||||||||||||||||||||||||||||||||||    
T  6944722 ggatgtgacaaattgtatgccaacgctctcctcc 6944755  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 6940604 - 6940640
Alignment:
Q  175 ctgcatttttcaaagtaaaatatatttcatgattcaa 211  Q
    |||||||||||||||||||||| ||||||||||||||    
T  6940604 ctgcatttttcaaagtaaaataaatttcatgattcaa 6940640  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 6943772 - 6943827
Alignment:
Q  176 tgcatttttcaaagtaaaatatatttcatgattcaaatgagcaatatgataaaactt 232  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||| ||| |||||    
T  6943772 tgcatttttcaaagtaaaataaatttcatgattc-aatcagcaatataatacaactt 6943827  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 300
Target Start/End: Original strand, 6242990 - 6243021
Alignment:
Q  269 ggatgtgacaaattgtatgccaacgctctcct 300  Q
    ||||||||||||||||||||||||||||||||    
T  6242990 ggatgtgacaaattgtatgccaacgctctcct 6243021  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 6451654 - 6451611
Alignment:
Q  175 ctgcatttttcaaagtaaaatatatttcatgattcaaatgagca 218  Q
    ||||| |||||||||| |||||||||||||||||| ||||||||    
T  6451654 ctgcaattttcaaagtgaaatatatttcatgattccaatgagca 6451611  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 7584603 - 7584660
Alignment:
Q  177 gcatttttcaaagtaaa--atatatttcatgattcaaatgagcaatatgataaaactt 232  Q
    |||||||||||||||||  |||||||| || ||||||||||||||||| | |||||||    
T  7584603 gcatttttcaaagtaaaatatatattttataattcaaatgagcaatataagaaaactt 7584660  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 6557074 - 6557041
Alignment:
Q  269 ggatgtgacaaattgtatgccaacgctctcctcc 302  Q
    ||||||||| ||||||||||||||||||||||||    
T  6557074 ggatgtgactaattgtatgccaacgctctcctcc 6557041  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 6733344 - 6733377
Alignment:
Q  269 ggatgtgacaaattgtatgccaacgctctcctcc 302  Q
    ||||||||| ||||||||||||||||||||||||    
T  6733344 ggatgtgactaattgtatgccaacgctctcctcc 6733377  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 6944941 - 6944974
Alignment:
Q  269 ggatgtgacaaattgtatgccaacgctctcctcc 302  Q
    ||||||||| ||||||||||||||||||||||||    
T  6944941 ggatgtgactaattgtatgccaacgctctcctcc 6944974  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 7585544 - 7585577
Alignment:
Q  269 ggatgtgacaaattgtatgccaacgctctcctcc 302  Q
    ||||||||| ||||||||||||||||||||||||    
T  7585544 ggatgtgactaattgtatgccaacgctctcctcc 7585577  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 6549051 - 6549015
Alignment:
Q  175 ctgcatttttcaaagtaaaatatatttcatgattcaa 211  Q
    ||||||||||||||||||||||  |||||||||||||    
T  6549051 ctgcatttttcaaagtaaaataagtttcatgattcaa 6549015  T

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