View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18713_low_6 (Length: 288)
Name: NF18713_low_6
Description: NF18713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18713_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 5105625 - 5105883
Alignment:
| Q |
18 |
aggtatactataaaaactcctatgcctgtcacaaatctcactcaaacacttaaaaaatgtctcaatcttttcattcaccaaccttccaatgcttttttcc |
117 |
Q |
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| T |
5105625 |
aggtatactataaaaactcctatgcctgtcacaaatctcactcaaacacttgaaaaatgtctcaatcttttcattcaccaaccttccaatgcttttttcc |
5105724 |
T |
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| Q |
118 |
ttgccttgtttttgttcctttatatca---tcatcttgatctaaaatcttcaccaaaaccaaccaagcttgcttctgatacaagtaagctgattcttctg |
214 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5105725 |
ttgccttgtttttgttcttttatatcatcatcatcttgatctaaaatcttcaccaaaaccaaccaagcttgcttctgatacaagtaagctgattcttctg |
5105824 |
T |
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| Q |
215 |
ccactgctttgtaactttctttaatgtatttctcacccaacaaatcaccaagttctgtg |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5105825 |
ccactgctttgtaactttctttaatgtatttctcacccaacaaatcaccaagttctgtg |
5105883 |
T |
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