View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_high_1 (Length: 495)
Name: NF18714_high_1
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 9e-62; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 14044493 - 14044617
Alignment:
| Q |
100 |
tatgatatatttttccatgaaatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgccaagtactaactccctccctaaagata |
199 |
Q |
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| T |
14044493 |
tatgatatatttttccatgaaatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgcaaagtactaactccctccctaaagata |
14044592 |
T |
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| Q |
200 |
ttattgccattctttctaaacagag |
224 |
Q |
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| T |
14044593 |
ttattgccattctttctaaacagag |
14044617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 13930401 - 13930482
Alignment:
| Q |
239 |
aaagttgcaaacagagtgcaaaacaaattctacattaacgatagattcttacatgttgtgttaagttttactctcatgtata |
320 |
Q |
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| T |
13930401 |
aaagttgcaaacagagtgcaaaacaaattctacattaacgataggttcttacatgttgtgttaagttttactctcatgtata |
13930482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 14044249 - 14044329
Alignment:
| Q |
18 |
gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagcggtggataacaagacagtctgtcacaaactaca |
98 |
Q |
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| T |
14044249 |
gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagatgtggataacaagacagtctgtcacaaactaca |
14044329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 13930070 - 13930147
Alignment:
| Q |
18 |
gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagcggtggataacaagacagtctgtcacaaacta |
96 |
Q |
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| T |
13930070 |
gaaacagacggaggcggcggcgccaca-caaatagttcgtcacatagcggtggataataagacagtctgtcacaaacta |
13930147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 14044622 - 14044663
Alignment:
| Q |
263 |
aaattctacattaacgatagattcttacatgttgtgttaagt |
304 |
Q |
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| T |
14044622 |
aaattctacattaacgatagattcttacatgttgtgttaagt |
14044663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 13476342 - 13476292
Alignment:
| Q |
239 |
aaagttgcaaacagagtgcaaaacaaattctacattaacgatagattctta |
289 |
Q |
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| T |
13476342 |
aaagttgcagacagagtgcgaaaccaattctacattaacgatagattctta |
13476292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 14020191 - 14020261
Alignment:
| Q |
419 |
ttggctgtctttatcgcttctaatgttgatgcggtagattcattacctgaagtctgcacttgagatttaga |
489 |
Q |
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| T |
14020191 |
ttggctgtctttgtcgattctcatgttgttgtggtatattcattacctgaagtatgcacttgagttttaga |
14020261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 13930348 - 13930405
Alignment:
| Q |
120 |
aatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgccaagt |
177 |
Q |
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| T |
13930348 |
aatctgcaatgaatgagctcttaatcttccactaacagagagtgaaaaaatgcaaagt |
13930405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 489
Target Start/End: Complemental strand, 13475905 - 13475862
Alignment:
| Q |
446 |
gatgcggtagattcattacctgaagtctgcacttgagatttaga |
489 |
Q |
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| T |
13475905 |
gatgtggtagattcattacctgaagtctgcacttgagttttaga |
13475862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 13476285 - 13476233
Alignment:
| Q |
331 |
agatgactgtgaactttgaagatgtatcacggaagaagataaaaatgtattac |
383 |
Q |
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| T |
13476285 |
agatgacagtaatctttgaagatgtaccacggaaaaagataaaaatgtattac |
13476233 |
T |
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