View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_high_11 (Length: 345)
Name: NF18714_high_11
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 14811304 - 14811615
Alignment:
| Q |
16 |
atcttgaaaaacggaatcacagtgagatcagagactacataaaatgtaaatgaacagtaagacaaagcaaaccagactacaaaaacgaaacagataccaa |
115 |
Q |
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| T |
14811304 |
atctttaaaaacggaatcacagtgagatcagagactaaataaa-tgtaaataaacagtaagacaaagcaaaccagactacaaaaacgaaacagataccaa |
14811402 |
T |
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| Q |
116 |
ccaatcgagcgggatcaaaacgtggccttttgatctcatcagagcgaagcaaagtcaacccatacttatgaatgagaaagctatcatccattacaaccct |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14811403 |
ccaaccgagcgggatcaaaacgtggccttttgatctcatcagagcgaagcgaagtcaacccatacttatgaatgagaaagctatcatccattacaaccct |
14811502 |
T |
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| Q |
216 |
tgtacccaacctaagcataatcctctttttgttaccagtggcaaaggagccattaacactatcaacaacattgaaagtggtaataacatacactaaatgc |
315 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14811503 |
tgtacccaacctaagcataatgctctttctgttaccagtggcaaaggagccattaacactatcaacaacattgaaagtggtgataacatacactaaatgc |
14811602 |
T |
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| Q |
316 |
ccgaagaacaaag |
328 |
Q |
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||||||||||||| |
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| T |
14811603 |
ccgaagaacaaag |
14811615 |
T |
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