View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18714_high_2 (Length: 442)

Name: NF18714_high_2
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18714_high_2
NF18714_high_2
[»] chr2 (5 HSPs)
chr2 (13-425)||(9043114-9043522)
chr2 (30-122)||(39445814-39445906)
chr2 (13-117)||(45154272-45154376)
chr2 (44-117)||(37847903-37847976)
chr2 (94-136)||(39401458-39401500)
[»] chr3 (3 HSPs)
chr3 (35-136)||(7885903-7886004)
chr3 (30-136)||(53143488-53143594)
chr3 (42-136)||(45707584-45707677)
[»] chr6 (5 HSPs)
chr6 (35-122)||(11703246-11703333)
chr6 (31-136)||(24141326-24141431)
chr6 (35-135)||(31632396-31632496)
chr6 (42-90)||(33099584-33099631)
chr6 (66-117)||(30250274-30250326)
[»] chr4 (6 HSPs)
chr4 (13-136)||(45047174-45047296)
chr4 (13-139)||(25479657-25479782)
chr4 (35-122)||(1586410-1586497)
chr4 (13-97)||(6077964-6078046)
chr4 (45-135)||(46061495-46061585)
chr4 (35-97)||(32212765-32212826)
[»] chr1 (13 HSPs)
chr1 (13-97)||(7789698-7789781)
chr1 (13-113)||(5041013-5041113)
chr1 (35-124)||(5114088-5114176)
chr1 (36-134)||(32913807-32913905)
chr1 (35-133)||(33603521-33603619)
chr1 (35-122)||(33259511-33259597)
chr1 (35-122)||(33279670-33279756)
chr1 (79-134)||(35615614-35615670)
chr1 (35-90)||(7712293-7712347)
chr1 (35-145)||(42483782-42483889)
chr1 (44-97)||(31206422-31206474)
chr1 (32-68)||(8444939-8444975)
chr1 (79-122)||(30335852-30335896)
[»] chr5 (7 HSPs)
chr5 (30-144)||(4942486-4942600)
chr5 (35-133)||(30471687-30471785)
chr5 (31-97)||(5367689-5367754)
chr5 (35-136)||(15558531-15558632)
chr5 (35-124)||(39955187-39955277)
chr5 (29-110)||(36974203-36974284)
chr5 (29-97)||(38037351-38037418)
[»] chr7 (4 HSPs)
chr7 (35-116)||(25795898-25795979)
chr7 (35-97)||(42710562-42710623)
chr7 (31-136)||(34975607-34975710)
chr7 (35-95)||(17603891-17603950)
[»] scaffold0092 (1 HSPs)
scaffold0092 (35-136)||(4892-4994)
[»] chr8 (1 HSPs)
chr8 (35-121)||(1421923-1422008)
[»] scaffold0067 (1 HSPs)
scaffold0067 (35-117)||(228-310)


Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 425
Target Start/End: Original strand, 9043114 - 9043522
Alignment:
Q  13 aaaatgttcaaatgacttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaattggtgtgggatcca 112  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||||||||||||  ||||| || ||||||||||||||||||||||| || || ||||    
T  9043114 aaaatgttcaaatgacttccactaataattctttatcatttatatttcaacaaaag-caactcaataatgattattttcttaaaattggcgtagggtcca 9043212  T
Q  113 cttaaaaatgaaggttttaagtgaaactctggaatttaagatacctnnnnnnnntctcaataaattaggtgtccgatcttaaattgcaaagaactattta 212  Q
    |||||||||  ||||||||||||| |||  ||| ||||||||||||        || |||||||||||||||  ||||||||||||||||||||| ||||    
T  9043213 cttaaaaatagaggttttaagtgagact--ggattttaagatacctaaaaaaaatcccaataaattaggtgtgggatcttaaattgcaaagaactgttta 9043310  T
Q  213 ggatggtctaaatacaaactcagaaaataaaaaccacgtatatacatttaagataagattcggatctgtgcaaaaattatgtaacattttttctgtataa 312  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9043311 g-atggtctaaatacaaactcagaaaataaaaaccacgtatatacatttaagataagattcggatctgtgcaaaaattatgtaacattttttctgtataa 9043409  T
Q  313 ctaactaacaacaaacaatattctaccgcagctcaccaactatcaacaacaaccacccagtgggttaagcaaactctttaaagtatctatctaccaaaca 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9043410 ctaactaacaacaaacaatattctaccgcagctcaccaactatcaacaacaaccacccagtgggctaagcaaactctttaaagtatctatctaccaaaca 9043509  T
Q  413 acaagtaagtact 425  Q
    || ||||||||||    
T  9043510 accagtaagtact 9043522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 39445906 - 39445814
Alignment:
Q  30 tccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatg 122  Q
    |||| |||||| ||||||| ||||||||||||||| |||| |||| ||||||||||||||| || |||| | ||||||| ||||||||| ||||    
T  39445906 tccaccaataactctttattatttacatttcaaca-aaaataactaaacaatgattattttattaaaaagttgtgtggggtccacttaagaatg 39445814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 45154376 - 45154272
Alignment:
Q  13 aaaatgttcaaatgacttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatcc 111  Q
    |||||||| |||||  | ||| |||||| ||||||| ||||||||||||||| ||||||| | |||||| |||||||| || |||| |||||| || |||    
T  45154376 aaaatgtttaaatggatcccaccaataactctttattatttacatttcaaca-aaaacaattcaacaataattattttattaaaaagtggtgtaggttcc 45154278  T
Q  112 acttaa 117  Q
    ||||||    
T  45154277 acttaa 45154272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 37847976 - 37847903
Alignment:
Q  44 tttatcatttacatttcaacaaaaaacaacttaacaatgattatttt-cttaaaattggtgtgggatccacttaa 117  Q
    |||||||||||||||| ||| |||||||||| ||| |||||||||||  | |||| ||||||| |||||||||||    
T  37847976 tttatcatttacattttaac-aaaaacaactcaacgatgattattttaataaaaagtggtgtgagatccacttaa 37847903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 39401500 - 39401458
Alignment:
Q  94 aaaattggtgtgggatccacttaaaaatgaaggttttaagtga 136  Q
    |||| |||||||  |||||||||||||||||||||||||||||    
T  39401500 aaaagtggtgtgatatccacttaaaaatgaaggttttaagtga 39401458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 7886004 - 7885903
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaag 133  Q
    |||||| ||||||||||||| |||||||| |||| ||||| |||||| |||||||| || |||| | ||||||||||||||||| |||| |||| |||||    
T  7886004 caataactctttatcatttatatttcaac-aaaagcaactcaacaattattattttattaaaaagttgtgtgggatccacttaagaatggaggtcttaag 7885906  T
Q  134 tga 136  Q
    |||    
T  7885905 tga 7885903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 53143594 - 53143488
Alignment:
Q  30 tccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggtt 128  Q
    |||| |||||| |||||||||||||||||||||| ||||  |||| |||||| |||||||| || |||| | ||||||||||||||||| ||||| |  |    
T  53143594 tccaccaataactctttatcatttacatttcaac-aaaagtaactaaacaataattattttattaaaaagttgtgtgggatccacttaagaatgaggtct 53143496  T
Q  129 ttaagtga 136  Q
    ||||||||    
T  53143495 ttaagtga 53143488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 45707677 - 45707584
Alignment:
Q  42 tctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaa-aattggtgtgggatccacttaaaaatgaaggttttaagtga 136  Q
    |||||||||||||||||||||| |||| ||||| | | || |||||||| |||| || ||||||| |||||||||||||||| |||| ||||||||    
T  45707677 tctttatcatttacatttcaac-aaaagcaactcatcgataattattttattaagaagtggtgtgagatccacttaaaaatg-aggtcttaagtga 45707584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 11703246 - 11703333
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatg 122  Q
    |||||| |||||||||||||||||| ||| ||||  |||| ||||||||||||||| || |||| | ||||||||||||||||||||||    
T  11703246 caataactctttatcatttacattttaac-aaaagtaactaaacaatgattattttattaaaaagttgtgtgggatccacttaaaaatg 11703333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 136
Target Start/End: Complemental strand, 24141431 - 24141326
Alignment:
Q  31 ccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttt 129  Q
    |||||||||| |||||||||||||||||||||  ||||  |||| ||||||||||||||| || |||| | ||||||   |||||||| ||||||||| |    
T  24141431 ccatcaataactctttatcatttacatttcaa-taaaagtaactaaacaatgattattttattaaaaagttgtgtggagaccacttaagaatgaaggtct 24141333  T
Q  130 taagtga 136  Q
    |||||||    
T  24141332 taagtga 24141326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 31632396 - 31632496
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaag 133  Q
    |||||| |||||||||||||||||||||| |||| ||| | || |||||||||||| || |||| | ||||||||||||||||| ||||  ||| |||||    
T  31632396 caataactctttatcatttacatttcaac-aaaagcaattcaataatgattattttattaaaaaattgtgtgggatccacttaagaatgggggtcttaag 31632494  T
Q  134 tg 135  Q
    ||    
T  31632495 tg 31632496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 33099584 - 33099631
Alignment:
Q  42 tctttatcatttacatttcaacaaaaaacaacttaacaatgattatttt 90  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  33099584 tctttatcatttacatttcaac-aaaaacaactcaacaatgattatttt 33099631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 30250326 - 30250274
Alignment:
Q  66 aaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaa 117  Q
    ||||||||| ||||||||||||||| || |||| ||||||| |||||||||||    
T  30250326 aaaacaactcaacaatgattattttattaaaaagtggtgtgagatccacttaa 30250274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 45047174 - 45047296
Alignment:
Q  13 aaaatgttcaaatgacttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaat-tggtgtgggatcc 111  Q
    |||||||| ||||||   ||| |||||  |||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||| | |||||||  ||    
T  45047174 aaaatgtttaaatgagacccaccaatagctctttatcatttacatttcaac-aaaaataactaaacaatgattattttattaaaatgttgtgtggggccc 45047272  T
Q  112 acttaaaaatgaaggttttaagtga 136  Q
    |||||| |||| |||| ||||||||    
T  45047273 acttaagaatg-aggtcttaagtga 45047296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 25479782 - 25479657
Alignment:
Q  13 aaaatgttcaaatgacttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatcc 111  Q
    |||||||  |||||||| ||  |||||| |||||||||||||||||||||| ||||  |||| |||||| | |||||| || |||| ||||||| |||||    
T  25479782 aaaatgtataaatgactccctccaataactctttatcatttacatttcaac-aaaagtaactcaacaattactattttattaaaaagtggtgtgagatcc 25479684  T
Q  112 acttaaaaatgaaggttttaagtgaaac 139  Q
    |||||| ||||  ||| |||||||||||    
T  25479683 acttaagaatg-gggtcttaagtgaaac 25479657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 1586497 - 1586410
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatg 122  Q
    |||||| ||||||||||||||||||||| ||||   || | ||||||||||||||| || |||||| ||||||| ||||||||| ||||    
T  1586497 caataactctttatcatttacatttcaataaaagt-aattaaacaatgattattttattaaaaatttgtgtggggtccacttaagaatg 1586410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 6077964 - 6078046
Alignment:
Q  13 aaaatgttcaaatgacttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 97  Q
    ||||| || |||||| | ||| |||||| ||||| |||||||| |||||||||||| ||||| ||||||||||||||| ||||||    
T  6077964 aaaatatttaaatgagtcccaccaataactctttgtcatttac-tttcaacaaaaa-caactcaacaatgattattttattaaaa 6078046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 46061495 - 46061585
Alignment:
Q  45 ttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaagtg 135  Q
    |||| |||||||||||||||||| | |||| ||||||||||||||| || |||| | |||||| |||||||||| ||||  | |||||||||    
T  46061495 ttattatttacatttcaacaaaaga-aactcaacaatgattattttattaaaaactagtgtggtatccacttaagaatggggattttaagtg 46061585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 32212765 - 32212826
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 97  Q
    |||||| |||||||||||||||||||||| |||| ||| | || |||||||||||| ||||||    
T  32212765 caataactctttatcatttacatttcaac-aaaagcaattgaaaaatgattattttattaaaa 32212826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 7789781 - 7789698
Alignment:
Q  13 aaaatgttcaaatgacttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 97  Q
    |||| |||||||||| |  || |||||| |||||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||    
T  7789781 aaaaagttcaaatgagtatcaccaataactctttatcatttacatttcaac-aaaagcaactcaacaatgattattttattaaaa 7789698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 5041013 - 5041113
Alignment:
Q  13 aaaatgttcaaatgacttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatcc 111  Q
    |||||||  |||||| | ||| |||||| | ||||||||||| ||||||||||||| ||||| ||||||||||||||| || |||| ||| |||||||||    
T  5041013 aaaatgtgtaaatgaatcccaccaataactttttatcatttatatttcaacaaaaa-caactcaacaatgattattttattaaaaagtggagtgggatcc 5041111  T
Q  112 ac 113  Q
    ||    
T  5041112 ac 5041113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 5114088 - 5114176
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaattggtgtgggatccacttaaaaatgaa 124  Q
    |||||| |||| ||||||||||||||||| |||||||||| |||||| |||||||| |||||| | ||||| | | ||||||| ||||||    
T  5114088 caataactcttcatcatttacatttcaac-aaaaacaactcaacaataattattttattaaaaattgtgtgaggttcacttaagaatgaa 5114176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 134
Target Start/End: Complemental strand, 32913905 - 32913807
Alignment:
Q  36 aataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaagt 134  Q
    ||||| |||||||||||||||||||||| |||| ||||| |||| |||||||||| || |||| || || |||| |||||||| |||| |||| ||||||    
T  32913905 aataactctttatcatttacatttcaac-aaaagcaactcaacagtgattattttattaaaaagtgatgcgggacccacttaagaatggaggtcttaagt 32913807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 33603521 - 33603619
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaag 133  Q
    |||||| ||||||||||||||||||||||||||   |||  ||||||||||||||| || |||| || |||| | ||||||||||||||| ||| |||||    
T  33603521 caataactctttatcatttacatttcaacaaaagt-aaccaaacaatgattattttattaaaaagtgatgtgaggtccacttaaaaatgatggtcttaag 33603619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 33259511 - 33259597
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatg 122  Q
    |||||||| |||||||||||||||||||| ||||  |||| ||||||| ||||||| || |||| ||||||||| ||||||||| ||||    
T  33259511 caataattttttatcatttacatttcaac-aaaagtaactcaacaatg-ttattttattaaaaagtggtgtggggtccacttaagaatg 33259597  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 122
Target Start/End: Original strand, 33279670 - 33279756
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatg 122  Q
    |||||||| |||||||||||||||||||| ||||  |||| ||||||| ||||||| || |||| ||||||||| ||||||||| ||||    
T  33279670 caataattttttatcatttacatttcaac-aaaagtaactcaacaatg-ttattttattaaaaagtggtgtggggtccacttaagaatg 33279756  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 35615614 - 35615670
Alignment:
Q  79 aatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaagt 134  Q
    |||||||||||| || |||| ||||||||||||||||||||||||| ||| ||||||    
T  35615614 aatgattattttatttaaaagtggtgtgggatccacttaaaaatgagggtcttaagt 35615670  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 7712293 - 7712347
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattatttt 90  Q
    |||||| | |||||||||||||||||||| |||||||||| || ||||||||||||    
T  7712293 caataactttttatcatttacatttcaac-aaaaacaactcaataatgattatttt 7712347  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 145
Target Start/End: Original strand, 42483782 - 42483889
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaattggtgtgggatccacttaaaaatgaaggttttaagt 134  Q
    |||||| || |||||||||||||||||||||||| |||    ||||||||||||||  |||||  | ||||||||||| |||| |||||||| | |||||    
T  42483782 caataactcattatcatttacatttcaacaaaaa-caataatacaatgattattttaataaaaa-gttgtgggatccatttaagaatgaagg-tctaagt 42483878  T
Q  135 gaaactctgga 145  Q
    |||||| ||||    
T  42483879 gaaactttgga 42483889  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 31206422 - 31206474
Alignment:
Q  44 tttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 97  Q
    ||||||||||| |||||||| ||||| |||| ||||||||||||||| ||||||    
T  31206422 tttatcatttatatttcaac-aaaaagaactcaacaatgattattttattaaaa 31206474  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 8444975 - 8444939
Alignment:
Q  32 catcaataattctttatcatttacatttcaacaaaaa 68  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  8444975 catcaataactctttattatttacatttcaacaaaaa 8444939  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 30335852 - 30335896
Alignment:
Q  79 aatgattattttctt-aaaattggtgtgggatccacttaaaaatg 122  Q
    |||||||||||| || |||| ||||||||||||||||||||||||    
T  30335852 aatgattattttatttaaaagtggtgtgggatccacttaaaaatg 30335896  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 4942486 - 4942600
Alignment:
Q  30 tccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggtt 128  Q
    |||| |||||| |||||||||||||||||||||| | ||  |||| || |||||||||||| || |||| | ||||||| ||||||||| ||||| |||     
T  4942486 tccaccaataactctttatcatttacatttcaac-ataagtaactaaataatgattattttattaaaaagttgtgtggggtccacttaagaatgagggtc 4942584  T
Q  129 ttaagtgaaactctgg 144  Q
    |||||||| |||||||    
T  4942585 ttaagtgagactctgg 4942600  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 30471785 - 30471687
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaatgaaggttttaag 133  Q
    |||||| |||||||||||||||||| ||| ||||  |||| ||||||||||||||| || |||| | ||||||| ||||||||||||||| ||| |||||    
T  30471785 caataactctttatcatttacatttaaac-aaaagtaactaaacaatgattattttattaaaaagttgtgtggggtccacttaaaaatgagggtcttaag 30471687  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 5367754 - 5367689
Alignment:
Q  31 ccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 97  Q
    |||||||||| |||||||||||||||||||||| ||||  |||| ||||||||||||||| ||||||    
T  5367754 ccatcaataactctttatcatttacatttcaac-aaaagtaactaaacaatgattattttattaaaa 5367689  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 15558632 - 15558531
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaat-tggtgtgggatccacttaaaaatgaaggttttaag 133  Q
    |||||| ||||||||||||| |||| |||| ||   |||| ||||||||||||||| ||||||  | |||||||||||| |||||||||||||| |||||    
T  15558632 caataactctttatcatttatattttaacagaagt-aactaaacaatgattattttattaaaaagttgtgtgggatccatttaaaaatgaaggtcttaag 15558534  T
Q  134 tga 136  Q
    |||    
T  15558533 tga 15558531  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 39955187 - 39955277
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt--aaaattggtgtgggatccacttaaaaatgaa 124  Q
    |||||| | |||| ||||||||||||||| |||||||||||| |||| |||||||| ||  |||||||||||||| || |||||| ||||||    
T  39955187 caataactatttaccatttacatttcaac-aaaaacaacttaccaataattattttattaaaaaattggtgtggggtctacttaagaatgaa 39955277  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 36974203 - 36974284
Alignment:
Q  29 ttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattatttt-cttaaaattggtgtgggatc 110  Q
    ||||| |||||| |||||||||||||||||||||| |||| ||||| |||||| ||||||||  | |||| ||||||||||||    
T  36974203 ttccaccaataactctttatcatttacatttcaac-aaaagcaactcaacaattattattttaataaaaagtggtgtgggatc 36974284  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 38037418 - 38037351
Alignment:
Q  29 ttccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 97  Q
    ||||| |||||| |||||||||||||||||| ||  |||| |||| |||||||||||||||| ||||||    
T  38037418 ttccaccaataactctttatcatttacattttaa-taaaagcaacataacaatgattattttattaaaa 38037351  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 25795898 - 25795979
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctta-aaattggtgtgggatccactta 116  Q
    |||||| |||||||||||||||||||||| ||||| |||| ||||||||||||||| ||| ||| | ||||||| ||||||||    
T  25795898 caataactctttatcatttacatttcaac-aaaaataactaaacaatgattattttattagaaagttgtgtggggtccactta 25795979  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 42710562 - 42710623
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaa 97  Q
    |||||| ||||||||||||||||||||||||||   || | ||||||||||||||| ||||||    
T  42710562 caataactctttatcatttacatttcaacaaaagt-aattcaacaatgattattttattaaaa 42710623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 34975607 - 34975710
Alignment:
Q  31 ccatcaataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaaaattggtgtgggatccacttaaaaatgaaggtttt 130  Q
    |||||||||| ||||||||||| | |||||||| |||| ||| | ||||||||| ||||| ||||||  |  ||| ||||||||||| ||||| ||| ||    
T  34975607 ccatcaataactctttatcattaatatttcaac-aaaagcaattcaacaatgatgatttttttaaaa-agtggtgagatccacttaagaatgagggtctt 34975704  T
Q  131 aagtga 136  Q
    ||||||    
T  34975705 aagtga 34975710  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 17603891 - 17603950
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttcttaa 95  Q
    |||||| |||||||||||||||||||||  ||||  |||| ||||||||||||||| ||||    
T  17603891 caataactctttatcatttacatttcaa-taaaagtaactaaacaatgattattttattaa 17603950  T

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Target: scaffold0092 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 4892 - 4994
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt--aaaattggtgtgggatccacttaaaaatgaaggttttaa 132  Q
    |||||| ||||||||||||||| |||||| |||||||||| ||||||||||||||| ||  |||| |||||| ||  |||||||| ||||| | | ||||    
T  4892 caataactctttatcatttacaattcaac-aaaaacaactcaacaatgattattttatttaaaaaatggtgttggggccacttaagaatgaggatcttaa 4990  T
Q  133 gtga 136  Q
    ||||    
T  4991 gtga 4994  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 1421923 - 1422008
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaaaaat 121  Q
    |||||| |||||||||||||||||||||| |||| ||||| ||||||||||| ||| || |||| | ||||||| |||||||||||||    
T  1421923 caataactctttatcatttacatttcaac-aaaagcaactcaacaatgattaatttattaaaaaatagtgtggg-tccacttaaaaat 1422008  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 310 - 228
Alignment:
Q  35 caataattctttatcatttacatttcaacaaaaaacaacttaacaatgattattttctt-aaaattggtgtgggatccacttaa 117  Q
    |||||| |||||||||||||||||||||  ||||  |||| ||||||||||||||| || |||| | ||||||| |||||||||    
T  310 caataactctttatcatttacatttcaa-taaaagtaactaaacaatgattattttattaaaaagttgtgtggggtccacttaa 228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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