View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_high_4 (Length: 406)
Name: NF18714_high_4
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_high_4 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 153 - 406
Target Start/End: Original strand, 13475630 - 13475881
Alignment:
| Q |
153 |
aaaaatttatctacgtttctttcaccaaaaagcttaagataattagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa |
252 |
Q |
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| T |
13475630 |
aaaaagttatatatgtttctttcacctaaaagcttaagatagttagtttataacaattgacaatactgata--gagttacagcagagtaattgcagagaa |
13475727 |
T |
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| Q |
253 |
atacgagaatgataagcataaggaaaattacactcacctcccataagttctattaaaatgacacagacctcaggtaatgaaaatgtgacttatagttcgt |
352 |
Q |
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|||||||||||||| | ||||| ||||||||||||||||||| || ||||||||||||| |||||||| | |||||||||||||| ||||| |||||||| |
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| T |
13475728 |
atacgagaatgataggaataagtaaaattacactcacctcccgtatgttctattaaaattacacagactttaggtaatgaaaatgcgacttctagttcgt |
13475827 |
T |
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| Q |
353 |
tccttcgttgtctgtcattactatcaaaggttcgtctaaaactcaagtgcagac |
406 |
Q |
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| T |
13475828 |
ttcttcgttgtctatcattactatcaaaggttcatctaaaactcaagtgcagac |
13475881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 153 - 403
Target Start/End: Complemental strand, 14020480 - 14020245
Alignment:
| Q |
153 |
aaaaatttatctacgtttctttcaccaaaaagcttaagataattagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa |
252 |
Q |
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| T |
14020480 |
aaaaattaatttatgtttctttcaccaaaaagcctaagatagttagtatttgataattgacaatactgata--gagttacag-----------cagagaa |
14020394 |
T |
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| Q |
253 |
atacgagaatgataagcataaggaaaattacactcacctcccataagttctattaaaatgacacagacctcaggtaatgaaaatgtgacttatagttcgt |
352 |
Q |
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| T |
14020393 |
atacgagaatgataagaataaggaaaattacactcacctcccataagttctattaaaa--atacggacttcaggtaatgaaaatgtgacttctagttcat |
14020296 |
T |
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| Q |
353 |
tccttcgttgtctgtcattactatcaaaggttcgtctaaaactcaagtgca |
403 |
Q |
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| T |
14020295 |
tccttcgttgtctgtcgttactatcaaaggttcatctaaaactcaagtgca |
14020245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 203 - 377
Target Start/End: Complemental strand, 14108636 - 14108462
Alignment:
| Q |
203 |
tgacaattgacaatactgatatagagttacagtagagtaaatgcagagaaatacgagaatgataagcataaggaaaattacactcacctcccataagttc |
302 |
Q |
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||||||||||||||| || |||||||||||| ||||||| | ||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||| |
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| T |
14108636 |
tgacaattgacaatatcgacatagagttacagcagagtaatttcagagaaatacgaaaatgataggaataatgaaaattacactcacctcccataagttc |
14108537 |
T |
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| Q |
303 |
tattaaaatgacacagacctcaggtaatgaaaatgtgacttatagttcgttccttcgttgtctgtcattactatc |
377 |
Q |
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| T |
14108536 |
tattaaaaggatacagacttcaggtaatgaaaatgcgacttctagttcgttacttcgttgtctgtcattactatc |
14108462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 14044853 - 14044769
Alignment:
| Q |
81 |
aaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta |
165 |
Q |
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| T |
14044853 |
aaatgtatttgtctaacgaaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta |
14044769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 14020607 - 14020524
Alignment:
| Q |
72 |
gagctcaaaaaatgtatttgtctaacggaatttcagcacatgactgctgg----aattaaaatgtatttatgttcacatttcaa |
151 |
Q |
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| T |
14020607 |
gagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtggaattaattaaaatgtatttatgttcacatttcaa |
14020524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 107
Target Start/End: Original strand, 13475564 - 13475594
Alignment:
| Q |
77 |
caaaaaatgtatttgtctaacggaatttcag |
107 |
Q |
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| T |
13475564 |
caaaaaatgtatttgtctaacggaatttcag |
13475594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 165
Target Start/End: Complemental strand, 14044720 - 14044691
Alignment:
| Q |
136 |
tatgttcacatttcaataaaaatttatcta |
165 |
Q |
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| T |
14044720 |
tatgttcacatttcaataaaaatttatcta |
14044691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 10507846 - 10507903
Alignment:
| Q |
195 |
ttagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa |
252 |
Q |
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| T |
10507846 |
ttagtttatgacaattgacaatactgatatagacttacagcagagtaattgcagagaa |
10507903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 10507760 - 10507812
Alignment:
| Q |
77 |
caaaaaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaa |
129 |
Q |
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| T |
10507760 |
caaaaaatgtatttgtctatctgaatttcagcacatgacaggtggaattaaaa |
10507812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 8753659 - 8753612
Alignment:
| Q |
195 |
ttagtttatgacaattgacaatactgatatagagttacagtagagtaa |
242 |
Q |
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| T |
8753659 |
ttagtttatgacaattgacattagtgatatagacttacagcagagtaa |
8753612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 40816207 - 40816245
Alignment:
| Q |
275 |
gaaaattacactcacctcccataagttctattaaaatga |
313 |
Q |
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| T |
40816207 |
gaaaattgcactcacctcccctaagttctattaaaatga |
40816245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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