View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_low_1 (Length: 543)
Name: NF18714_low_1
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 85 - 529
Target Start/End: Complemental strand, 31898333 - 31897894
Alignment:
| Q |
85 |
tggtgacttcacactttgacttgtcggatccttcttcctctggaggattttatgccttagcaatgaaggagccttaccagcatcagacaccgctcaccat |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31898333 |
tggtgacttcacactttgacttgtcggatccttcttcctccggaggattttatgccttagcaatgaaggagccttatcagcatcagacaccgctcaccat |
31898234 |
T |
|
| Q |
185 |
tcttttccaccagcttctccaaccacaacaacatatttgttgtttgcattttccttcagtaataaaagatgttatacaaattctatttgattctaactaa |
284 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31898233 |
tcttttccaccagcttttccaaccacaacaacatatttgttgtttgcattttccttcagtaataaaagatgttatccaaattctatttgattctaactaa |
31898134 |
T |
|
| Q |
285 |
tatagtgattactaataacaatgaaattgtgatgaatttgttgagacaatcatgcatgtttttcgtgaatatcaaagaaaaataaataaactaaaacttg |
384 |
Q |
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| T |
31898133 |
tatagtgatcactaataacaatgaaattgtgatgaatttgctgagacaatcatgcatgtttttcgtgaatatcaaagaaaaataaataaactaaaacttg |
31898034 |
T |
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| Q |
385 |
agaaatatagtttttatgaattttttactgtacttaataaattaaacttgtagagtatcatcattatcttaaagatccaacctacttcatacggcgttct |
484 |
Q |
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| T |
31898033 |
agaaatatagtttttatgaattttt-----tacttaataaattaaacttgtagagagtcatcattatcttatagatccaacctacttcatacggcgttct |
31897939 |
T |
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| Q |
485 |
tttacaatcaccacattcttcacatgtgttccacaatttagatat |
529 |
Q |
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| T |
31897938 |
tttacaatcaccacattcttcacatgtgttccacaatttagatat |
31897894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 242 - 529
Target Start/End: Complemental strand, 31930120 - 31929838
Alignment:
| Q |
242 |
agtaataaaagatgttatacaaattctatttgattctaactaatatagtgattactaataacaatgaaattgtgatgaatttgttgagacaatcatgcat |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31930120 |
agtaataaaagatgttatacaaattctatttgattctaactaatattttgatcaccaataacaatgaaattgtgattaatttgttgagacaatcatgcat |
31930021 |
T |
|
| Q |
342 |
gtttttcgtgaatatcaaagaaaaataaataaactaaaacttgagaaatatagtttttatgaattttttactgtacttaataaattaaacttgtagagta |
441 |
Q |
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| T |
31930020 |
gtttttcttgaatatcaaagaaaaataaataaactaaaacttgagcaatatagtttttatgaa-----taatttacttaataaattaaatttgtagagta |
31929926 |
T |
|
| Q |
442 |
tcatcattatcttaaagatccaacctacttcatacggcgttcttttacaatcaccacattcttcacatgtgttccacaatttagatat |
529 |
Q |
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| T |
31929925 |
tcatcattatcttatagatccaacctacttcatatggcgtttttttacaatcaccacattcttcacatgtgttccacaatttagatat |
31929838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 415 - 529
Target Start/End: Complemental strand, 31863794 - 31863680
Alignment:
| Q |
415 |
tacttaataaattaaacttgtagagtatcatcattatcttaaagatccaacctacttcatacggcgttcttttacaatcaccacattcttcacatgtgtt |
514 |
Q |
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|||||||||| || |||||||||||||| ||| |||||| | |||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
31863794 |
tacttaataactttaacttgtagagtataatcgttatctaatagatccaatctacttcatatggcattcttttacaatcaccacattcttcacatgtgtt |
31863695 |
T |
|
| Q |
515 |
ccacaatttagatat |
529 |
Q |
| |
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||||||||||||||| |
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| T |
31863694 |
ccacaatttagatat |
31863680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 248 - 410
Target Start/End: Complemental strand, 31842889 - 31842727
Alignment:
| Q |
248 |
aaaagatgttatacaaattctatttgattctaactaatatagtgattactaataacaatgaaattgtgatgaatttgttgagacaatcatgcatgttttt |
347 |
Q |
| |
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|||||||||||| ||||||||||| | |||||||||||||||||| |||||||||||| ||||| |||||||| || |||||||||||||| ||||| |
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| T |
31842889 |
aaaagatgttatttaaattctatttaaatctaactaatatagtgatcactaataacaattaaatttaaatgaatttctttagacaatcatgcatcttttt |
31842790 |
T |
|
| Q |
348 |
cgtgaatatcaaagaaaaataaataaactaaaacttgagaaatatagtttttatgaatttttt |
410 |
Q |
| |
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| | |||||||| |||| ||||||||||||| |||||||| |||||||||||||||||| |
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| T |
31842789 |
cataaatatcaagaaaaagaaaataaactaaaatttgagaaaaggagtttttatgaatttttt |
31842727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 87 - 241
Target Start/End: Complemental strand, 31930324 - 31930171
Alignment:
| Q |
87 |
gtgacttcacactttgacttgtcggatccttcttcctctggaggattttatgccttagcaatgaaggagccttaccagcatcagacaccgctcaccattc |
186 |
Q |
| |
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|||| |||| || |||| |||||||||||||||||| |||||||||| |||| || |||| ||||||||||| || ||||| ||| ||||||||||| |
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| T |
31930324 |
gtgatttcatacattgatttgtcggatccttcttccactggaggattgaatgcgttggcaacaaaggagccttatcaacatcatacatcgctcaccatt- |
31930226 |
T |
|
| Q |
187 |
ttttccaccagcttctccaaccacaacaacatatttgttgtttgcattttccttc |
241 |
Q |
| |
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|||||||||||||| ||||| || |||||| |||||||||||| |||||||||| |
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| T |
31930225 |
ttttccaccagctttcccaactacgacaacaaatttgttgtttggattttccttc |
31930171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 248 - 368
Target Start/End: Original strand, 31845468 - 31845587
Alignment:
| Q |
248 |
aaaagatgttatacaaattctatttgattctaactaatatagtgattactaataacaatgaaattgtgatgaatttgttgagacaatcatgcatgttttt |
347 |
Q |
| |
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||||| |||||| |||||||| ||||||||||||| |||||||||| ||||| ||||||||| |||||| | ||||||||||||||| || |||| | |
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| T |
31845468 |
aaaaggtgttattcaaattctttttgattctaactcatatagtgatcactaaagacaatgaaaatgtgat-attttgttgagacaatcttgtatgtcctg |
31845566 |
T |
|
| Q |
348 |
cgtgaatatcaaagaaaaata |
368 |
Q |
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| | ||||||||||||||||| |
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| T |
31845567 |
cataaatatcaaagaaaaata |
31845587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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