View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_low_10 (Length: 356)
Name: NF18714_low_10
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 38056686 - 38056425
Alignment:
| Q |
16 |
atacagaaggagattcaatttcaattagttttggtatttattacactagttacttcttaattcccatataataatctattcatttccatgttgtcacagt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38056686 |
atacagaaggagattcaatttcaattagttttggtatttattacactagttacttcttaattcccatataataatctattcatttccatgttgtcacagt |
38056587 |
T |
|
| Q |
116 |
tggttgcccttttatttagtttaatttttctttaaatgttttgtattgaaagatttggagaggaagatcgaaaccagaagaaaagcatttcttgaagctg |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38056586 |
tggttgcccttttatttaatttaatttttctttaaatgttttgtattgaaagatttggagaggaagattgaaaccagaagaaaagcatttcttgaagctg |
38056487 |
T |
|
| Q |
216 |
cccccatcatgagaaaaagtttctcaggtatatgacnnnnnnnatgcaatgtgtttatataa |
277 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38056486 |
cccccatcatgagaaaaagtttctcaggtatatgactttttttatgcaatgtgtttatataa |
38056425 |
T |
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