View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18714_low_13 (Length: 328)

Name: NF18714_low_13
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18714_low_13
NF18714_low_13
[»] chr6 (8 HSPs)
chr6 (1-310)||(21971938-21972247)
chr6 (20-312)||(20205393-20205688)
chr6 (20-312)||(22099416-22099711)
chr6 (22-292)||(20086075-20086345)
chr6 (22-312)||(22204798-22205088)
chr6 (22-240)||(24385083-24385300)
chr6 (21-250)||(20237987-20238216)
chr6 (21-250)||(22131971-22132200)
[»] scaffold0264 (1 HSPs)
scaffold0264 (22-292)||(16024-16294)
[»] scaffold0074 (1 HSPs)
scaffold0074 (22-292)||(47647-47914)
[»] scaffold0007 (1 HSPs)
scaffold0007 (82-289)||(5174-5378)
[»] chr5 (1 HSPs)
chr5 (89-145)||(9674592-9674648)
[»] chr1 (1 HSPs)
chr1 (89-145)||(47635227-47635283)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 21971938 - 21972247
Alignment:
Q  1 atggatcttctgaaagtattttagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21971938 atggatcttctgaaagtattttagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggata 21972037  T
Q  101 taattcatacctaacattacagctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21972038 taattcatacctaacattacagctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggtt 21972137  T
Q  201 ctgcaatcattaggtgacaaatccggcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttttgttgcaaacttgttcttgt 300  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21972138 ctgcaatcattaggcgacaaatccagcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttttgttgcaaacttgttcttgt 21972237  T
Q  301 caccactaag 310  Q
    ||||||||||    
T  21972238 caccactaag 21972247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 20205393 - 20205688
Alignment:
Q  20 tttagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggatataattcatacctaacatta 119  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||||| |||||||||  | ||||||||||||||||||||||||||||||| ||||||    
T  20205393 tttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacatta 20205492  T
Q  120 cagctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggttctgcaatcattaggtgaca 219  Q
    ||||||||||||||||||||||| || ||||||||| |||| || | ||||| | |||||||||||||| ||||||||||||||||||||||||| ||||    
T  20205493 cagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacaggttctgcaatcattaggcgaca 20205592  T
Q  220 aatccggcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttttgttgcaaactt---gttcttgtcaccactaagtg 312  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |||||||||||   ||| ||||||||| ||||||    
T  20205593 aatccggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgcttctttggttgcaaacttctcgtttttgtcaccaataagtg 20205688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 22099416 - 22099711
Alignment:
Q  20 tttagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggatataattcatacctaacatta 119  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||||| |||||||||  | ||||||||||||||||||||||||||||||| ||||||    
T  22099416 tttagaatcttgtttggaatcatttgttcgaggagctagctcatttggtgaaagaacagtaatagacctataaaatggatataattcataccttacatta 22099515  T
Q  120 cagctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggttctgcaatcattaggtgaca 219  Q
    ||||||||||||||||||||||| || ||||||||| |||| || | ||||| | |||||||||||||| ||||||||||||||||||||||||| ||||    
T  22099516 cagctaggataaagaaatctccctcccacctttccatcacaactctttgaaactttctcaatagcactactgagacaggttctgcaatcattaggcgaca 22099615  T
Q  220 aatccggcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttttgttgcaaactt---gttcttgtcaccactaagtg 312  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |||||||||||   ||| ||||||||| ||||||    
T  22099616 aatccggcgtgcactgagctagacagtaaagggtctgattttccgaatcttgtgcttctttggttgcaaacttctcgtttttgtcaccaataagtg 22099711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 292
Target Start/End: Original strand, 20086075 - 20086345
Alignment:
Q  22 tagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggatataattcatacctaacattaca 121  Q
    ||||||||||  | |||| ||||||||||||| ||||||||||||| ||| || ||| | ||||||||||||| ||||||||||||||||||||||||||    
T  20086075 tagaatcttggtttgaatgatttgtttgaggaacaagctcatttggcgaaggagcattaatagacctataaaaaggatataattcatacctaacattaca 20086174  T
Q  122 gctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggttctgcaatcattaggtgacaaa 221  Q
    ||||||| |||||| ||||||||| ||||||||| |||| |     | |||| |||||||||||||| ||||||||||||||||||||   ||||||||     
T  20086175 gctaggaaaaagaactctcccacccacctttccatcacaacagctaggaagtttctcaatagcactattgagacaggttctgcaatcaccgggtgacaag 20086274  T
Q  222 tccggcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttttgttgcaaactt 292  Q
    |||||||||||||||||||||| |||||||||||||  ||| ||||  | |||||||||||| ||||||||    
T  20086275 tccggcgtgcactgagctagacagtaaagggtctgagattcagaaatccttgcttcttttgtggcaaactt 20086345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 22205088 - 22204798
Alignment:
Q  22 tagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggatataattcatacctaacattaca 121  Q
    ||||||||||  | |||| ||||||||||||| ||||||||||||| ||| || ||| | ||||||||||||| ||||||| ||||||||||| ||||||    
T  22205088 tagaatcttgggttgaatgatttgtttgaggaacaagctcatttggtgaaggagcattaatagacctataaaaaggatatagttcatacctaatattaca 22204989  T
Q  122 gctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggttctgcaatcattaggtgacaaa 221  Q
    ||||||| ||| || |||| |||| ||||||||| |||| |     | ||||  ||||||||||||| | ||||||||||||||||||   ||||||||     
T  22204988 gctaggaaaaacaactctcgcacccacctttccatcacaacagctaggaagttcctcaatagcactattaagacaggttctgcaatcaccgggtgacaag 22204889  T
Q  222 tccggcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttttgttgcaaacttgttcttgtcaccactaagtg 312  Q
    |||||||||||||||||||| | |||||||||||||  ||| ||||    |||||||||||| ||||| || || |||||| || ||||||    
T  22204888 tccggcgtgcactgagctaggcagtaaagggtctgagattcagaaatctttgcttcttttgtggcaaatttcttgttgtcagcagtaagtg 22204798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 24385300 - 24385083
Alignment:
Q  22 tagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggatataattcatacctaacattaca 121  Q
    ||||||||||| | |||||||||||||||||| ||||||||||||  ||| || ||  | ||||  ||||||| ||| ||| |||||||||||  |||||    
T  24385300 tagaatcttgttttgaatcatttgtttgaggaacaagctcatttgatgaaggagcaataatagatttataaaaaggaaatagttcatacctaatgttaca 24385201  T
Q  122 gctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggttctgcaatcattaggtgacaaa 221  Q
    ||||||| || ||| ||||| |||   ||||||| |||| | | ||| ||| |  |||||||||||| ||||||||||||||||||||||||| |||||     
T  24385200 gctaggaaaaggaactctcc-accctgctttccatcacaacatagtggaagagattcaatagcactattgagacaggttctgcaatcattaggggacaag 24385102  T
Q  222 tccggcgtgcactgagcta 240  Q
    || ||||||||||||||||    
T  24385101 tctggcgtgcactgagcta 24385083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 20237987 - 20238216
Alignment:
Q  21 ttagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggatataattcatacctaacattac 120  Q
    |||||||||||| | |||||||||||||||||| ||||||||||| | ||| || ||| |||||| |||||||| |||||||  |||||||||| |||||    
T  20237987 ttagaatcttgttttgaatcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattac 20238086  T
Q  121 agctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggttctgcaatcattaggtgacaa 220  Q
    | |||||||| | |  |||||||||   ||||||| || |    | ||||||| ||  |||||||| |  ||| |||||||||||||||||    |||||    
T  20238087 aactaggatataaatttctcccaccctgctttccatcatacacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaa 20238186  T
Q  221 atccggcgtgcactgagctagactgtaaag 250  Q
     || ||||||||||||||||||| ||||||    
T  20238187 gtctggcgtgcactgagctagacagtaaag 20238216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 22131971 - 22132200
Alignment:
Q  21 ttagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggatataattcatacctaacattac 120  Q
    |||||||||||| | |||||||||||||||||| ||||||||||| | ||| || ||| |||||| |||||||| |||||||  |||||||||| |||||    
T  22131971 ttagaatcttgttttgaatcatttgtttgaggaacaagctcatttagtgaaggagcattagtagatctataaaaaggatatagctcatacctaatattac 22132070  T
Q  121 agctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggttctgcaatcattaggtgacaa 220  Q
    | |||||||| | |  |||||||||   ||||||| || |    | ||||||| ||  |||||||| |  ||| |||||||||||||||||    |||||    
T  22132071 aactaggatataaatttctcccaccctgctttccatcatacacatttgaaagtttcctaatagcacaaccgaggcaggttctgcaatcattgaacgacaa 22132170  T
Q  221 atccggcgtgcactgagctagactgtaaag 250  Q
     || ||||||||||||||||||| ||||||    
T  22132171 gtctggcgtgcactgagctagacagtaaag 22132200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 292
Target Start/End: Original strand, 16024 - 16294
Alignment:
Q  22 tagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggatataattcatacctaacattaca 121  Q
    ||||||||||  | |||| ||||||||||||| ||||||||||||| ||| || ||| | ||||||||||||| ||||||| ||||||||||||||||||    
T  16024 tagaatcttggtttgaatgatttgtttgaggaacaagctcatttggcgaaggagcattaatagacctataaaaaggatatagttcatacctaacattaca 16123  T
Q  122 gctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggttctgcaatcattaggtgacaaa 221  Q
    ||||||  |||||||||||||||| |||||||||  ||  |   | | |||    ||||||||| ||  |||||||||||||||||  ||||| |||||     
T  16124 gctaggcaaaagaaatctcccacccacctttccataaccacacagaggaagaagatcaatagcagtatagagacaggttctgcaattgttaggagacaag 16223  T
Q  222 tccggcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttttgttgcaaactt 292  Q
    || ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  16224 tctggcgtgcactgagctagacagtatagggtctgatttttcgaaactcgtgcttcttttgttgcaaactt 16294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 292
Target Start/End: Complemental strand, 47914 - 47647
Alignment:
Q  22 tagaatcttgtatggaatcatttgtttgaggagcaagctcatttggggaaagaacataagtagacctataaaatggatataattcatacctaacattaca 121  Q
    ||||||||||| | ||||  |||||||||||| ||||||||||||| |||  |   |   ||||||||||||| ||||||| ||||||||||||||||||    
T  47914 tagaatcttgttttgaatgttttgtttgaggaacaagctcatttggtgaagta---ttgatagacctataaaaaggatatagttcatacctaacattaca 47818  T
Q  122 gctaggataaagaaatctcccaccaacctttccaacacagctttgtgaaagtgtctcaatagcactagtgagacaggttctgcaatcattaggtgacaaa 221  Q
    ||||||| ||| ||   |||||||   ||||||| || |    || | |||    ||||||||| ||  |||||||||||||||||  ||||| |||||     
T  47817 gctaggaaaaaaaaccatcccaccctgctttccatcaaaaagctgagcaagaaaatcaatagcagtatagagacaggttctgcaattgttaggagacaag 47718  T
Q  222 tccggcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttttgttgcaaactt 292  Q
    || ||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  47717 tctggcgtgcactgagctagacagtaaagggtctgttttttcgaaactcgtgcttcttttgttgcaaactt 47647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 289
Target Start/End: Complemental strand, 5378 - 5174
Alignment:
Q  82 tagacctataaaatggatataattcatacctaacattacagctaggataaagaaatctcccaccaacctttccaacac-agctttgtgaaagtgtctcaa 180  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| || |||||||||  |||||||| ||| | |  |  |||  | | ||||    
T  5378 tagacctataaaaaggatatagttcatacctaatattacagctaggaaaaacaactctcccaccctcctttccatcacaaaccataggaagatat-tcaa 5280  T
Q  181 tagcactagtgagacaggttctgcaatcattaggtgacaaatccggcgtgcactgagctagactgtaaagggtctgattttccgaaactcgtgcttcttt 280  Q
    |||| |||  |||||||||||||||||  ||||| ||||| ||||||||||||||  |||||| ||| |||||||||||||  ||||  ||||||||| |    
T  5279 tagctctatggagacaggttctgcaattgttaggggacaagtccggcgtgcactgttctagacagtacagggtctgatttt-tgaaa--cgtgcttctct 5183  T
Q  281 tgttgcaaa 289  Q
    |||||||||    
T  5182 tgttgcaaa 5174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 9674592 - 9674648
Alignment:
Q  89 ataaaatggatataattcatacctaacattacagctaggataaagaaatctcccacc 145  Q
    |||||| || ||||||||||| |||||||||||||||||| | | || |||||||||    
T  9674592 ataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccacc 9674648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 47635283 - 47635227
Alignment:
Q  89 ataaaatggatataattcatacctaacattacagctaggataaagaaatctcccacc 145  Q
    |||||| || ||||||||||| |||||||||||||||||| | | || |||||||||    
T  47635283 ataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccacc 47635227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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