View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_low_15 (Length: 310)
Name: NF18714_low_15
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 72 - 292
Target Start/End: Original strand, 16816368 - 16816588
Alignment:
| Q |
72 |
ttttttatgatattattttcaaacctaaagaagtttaaggagaataaaaaccacaacacacatgttgttgtactttgtgatttttggaacagcttctaag |
171 |
Q |
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| T |
16816368 |
tttttcatgacattatcttcaaatgtaaagaagtttaaggtgaataaaaaccacaacacacatgttgttgtactttgtgttttttggaacagcttctaag |
16816467 |
T |
|
| Q |
172 |
tgatccatgggtgaaaggtgaaaaagccaaagatgttcaaatggaccctgagattgtctcaaggttacaaagctttaatgcaagacgtaaacttcgtgca |
271 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16816468 |
tgatccatgggtcaaaggtgagaaagccaaagatgttcaaatggaccctgagattgtctcaaggctacaaagctttaatgcaagacgtaaacttcgtgca |
16816567 |
T |
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| Q |
272 |
gctgcaattgctagtgtttgg |
292 |
Q |
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| T |
16816568 |
gctgcaattgctagtgtttgg |
16816588 |
T |
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