View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_low_16 (Length: 302)
Name: NF18714_low_16
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 113 - 286
Target Start/End: Original strand, 31788506 - 31788683
Alignment:
| Q |
113 |
tttatgaacaaggatatacaagtata----ttattagtaaatggatttatattaaacaattgaaaatagcatttttagaataatcataattatttcttat |
208 |
Q |
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| T |
31788506 |
tttatgaacaaggatatacaagtatatatattattagtaaatgaatttatataaaaccactggaaataggattttcagaataattataattatttcttat |
31788605 |
T |
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| Q |
209 |
tataaaattaataggaaacgtacaatataagttatgaagccaaatatatatcaataatttgatggtgcaagatgaaaa |
286 |
Q |
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| T |
31788606 |
tataaaattaataggaaacgtataatataagttatgaagccaaatatatatcaataatttgatgatgcaagatgaaaa |
31788683 |
T |
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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 31788218 - 31788304
Alignment:
| Q |
32 |
gctagttttcatcaagacatctcctctcaattggcacatgtnnnnnnnnccttaatttctttcatttcataagatccccaatttatgaac |
121 |
Q |
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| T |
31788218 |
gctagttttcatcgagacatctc---tcaattggcacatgtaaaaaaaacctcaatttctttcatttcataagatccccaatttctgaac |
31788304 |
T |
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