View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18714_low_17 (Length: 290)

Name: NF18714_low_17
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18714_low_17
NF18714_low_17
[»] chr2 (1 HSPs)
chr2 (1-290)||(5128059-5128354)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 5128059 - 5128354
Alignment:
Q  1 ccaaggaaaacctgacaatgataacagatattaaaataaaagctgaatcggtgaagaactgcgtctgcgtgaagtatacaattagctctataaagccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5128059 ccaaggaaaacctgacaatgataacagatattaaaataaaagctgaatcggtgaagaactgcgtctgcgtgaagtatacaattagctctataaagccaat 5128158  T
Q  101 taattataatgatgtcacgtacttcaacaatatt------tggtctttacaataattctatagtcaagttgcacaaactaggtatctgactaattgactg 194  Q
    ||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5128159 taattataatgatgtcacgtacttcaacaatatttggtgatggtctttacaataattctatagtcaagttgcacaaactaggtatctgactaatcgactg 5128258  T
Q  195 tgcctctcatcattgagatttgatttcaaacaaaatgaatggatatacctgaatcgtgcctgggtgatcgcgcgaattatttcctggccaagaggt 290  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||    
T  5128259 tgcctctcaccattgagatttgatttcaaacaaaatgaatggatatacctgaatcatgcctgggtgatcacgtgaattatttcctggccaagaggt 5128354  T

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