View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_low_19 (Length: 270)
Name: NF18714_low_19
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 4389585 - 4389338
Alignment:
| Q |
8 |
ccaataatatattttccttttattgggaattcagatatgttgggccaataaagctaaaaccaggaggcttaacgtgtctttcccttgttttaataactcc |
107 |
Q |
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| T |
4389585 |
ccaagaatatattttccctttattgggaattcagatatgttgggccaataaagctaaaaccagaaggcttaacgtgtctttcccttgttttaataactcc |
4389486 |
T |
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| Q |
108 |
caattcatgccctagttcataacacttggagggttcaacagtttttgcagaagcattttcaactttcaacatacttcataggctatccttatcactttct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4389485 |
caattcatgccctagttcataacacttggagggttcaacagtttttgcagaagcattttcaactttcaacatacttcataggctatccttatcactttct |
4389386 |
T |
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| Q |
208 |
cgagacagcaaat-gcatcacaccataaagaatcgatcttcaatgaat |
254 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4389385 |
cgagacagcaaatggcatcacaccataaagaatcgatcttcaatgaat |
4389338 |
T |
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