View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18714_low_2 (Length: 495)

Name: NF18714_low_2
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18714_low_2
NF18714_low_2
[»] chr6 (10 HSPs)
chr6 (100-224)||(14044493-14044617)
chr6 (239-320)||(13930401-13930482)
chr6 (18-98)||(14044249-14044329)
chr6 (18-96)||(13930070-13930147)
chr6 (263-304)||(14044622-14044663)
chr6 (239-289)||(13476292-13476342)
chr6 (419-489)||(14020191-14020261)
chr6 (120-177)||(13930348-13930405)
chr6 (446-489)||(13475862-13475905)
chr6 (331-383)||(13476233-13476285)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 9e-62; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 14044493 - 14044617
Alignment:
Q  100 tatgatatatttttccatgaaatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgccaagtactaactccctccctaaagata 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14044493 tatgatatatttttccatgaaatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgcaaagtactaactccctccctaaagata 14044592  T
Q  200 ttattgccattctttctaaacagag 224  Q
    |||||||||||||||||||||||||    
T  14044593 ttattgccattctttctaaacagag 14044617  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 13930401 - 13930482
Alignment:
Q  239 aaagttgcaaacagagtgcaaaacaaattctacattaacgatagattcttacatgttgtgttaagttttactctcatgtata 320  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13930401 aaagttgcaaacagagtgcaaaacaaattctacattaacgataggttcttacatgttgtgttaagttttactctcatgtata 13930482  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 14044249 - 14044329
Alignment:
Q  18 gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagcggtggataacaagacagtctgtcacaaactaca 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  14044249 gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagatgtggataacaagacagtctgtcacaaactaca 14044329  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 13930070 - 13930147
Alignment:
Q  18 gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagcggtggataacaagacagtctgtcacaaacta 96  Q
    |||||||||||||||  |||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13930070 gaaacagacggaggcggcggcgccaca-caaatagttcgtcacatagcggtggataataagacagtctgtcacaaacta 13930147  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 14044622 - 14044663
Alignment:
Q  263 aaattctacattaacgatagattcttacatgttgtgttaagt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14044622 aaattctacattaacgatagattcttacatgttgtgttaagt 14044663  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 13476342 - 13476292
Alignment:
Q  239 aaagttgcaaacagagtgcaaaacaaattctacattaacgatagattctta 289  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  13476342 aaagttgcagacagagtgcgaaaccaattctacattaacgatagattctta 13476292  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 14020191 - 14020261
Alignment:
Q  419 ttggctgtctttatcgcttctaatgttgatgcggtagattcattacctgaagtctgcacttgagatttaga 489  Q
    |||||||||||| ||| |||| |||||| || |||| |||||||||||||||| |||||||||| ||||||    
T  14020191 ttggctgtctttgtcgattctcatgttgttgtggtatattcattacctgaagtatgcacttgagttttaga 14020261  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 13930348 - 13930405
Alignment:
Q  120 aatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgccaagt 177  Q
    ||||||||||||||||| || |||||||| |||||||||| |||||||||||| ||||    
T  13930348 aatctgcaatgaatgagctcttaatcttccactaacagagagtgaaaaaatgcaaagt 13930405  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 489
Target Start/End: Complemental strand, 13475905 - 13475862
Alignment:
Q  446 gatgcggtagattcattacctgaagtctgcacttgagatttaga 489  Q
    |||| |||||||||||||||||||||||||||||||| ||||||    
T  13475905 gatgtggtagattcattacctgaagtctgcacttgagttttaga 13475862  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 13476285 - 13476233
Alignment:
Q  331 agatgactgtgaactttgaagatgtatcacggaagaagataaaaatgtattac 383  Q
    ||||||| || | ||||||||||||| ||||||| ||||||||||||||||||    
T  13476285 agatgacagtaatctttgaagatgtaccacggaaaaagataaaaatgtattac 13476233  T

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