View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_low_22 (Length: 248)
Name: NF18714_low_22
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 41785277 - 41785110
Alignment:
| Q |
68 |
atatttctaaattcaatatatcgatcctccaatttaaatgtttattttattcttgtatattttgaggctatatttttgataatataacaattgaaatgtt |
167 |
Q |
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| T |
41785277 |
atatctctaaatttaatatattggtcctccaatttgaatgtttattttactcttgtgtattttgaggttatatttt-gataatataacaattgagatgtt |
41785179 |
T |
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| Q |
168 |
tatgtgacaacttaatcgatcacatgacatatttagatgaattttcacttaacttaactttcatattct |
236 |
Q |
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| T |
41785178 |
tatgtgacaacttagtcgatcacatgacatatttagatgaatttttacttaacttagctttcattttct |
41785110 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 41785396 - 41785339
Alignment:
| Q |
21 |
gtggatgattgattagtgaaccttaatgaagcataatactattaagaatatttctaaa |
78 |
Q |
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| T |
41785396 |
gtggatgattgattagtgaaccttaatgaagcataatactattaagaatatttctaaa |
41785339 |
T |
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