View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18714_low_23 (Length: 246)

Name: NF18714_low_23
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18714_low_23
NF18714_low_23
[»] chr4 (3 HSPs)
chr4 (120-231)||(53118547-53118664)
chr4 (11-43)||(4730661-4730693)
chr4 (11-43)||(24573822-24573854)
[»] chr2 (2 HSPs)
chr2 (11-43)||(28783900-28783932)
chr2 (15-43)||(19281822-19281850)
[»] chr8 (1 HSPs)
chr8 (12-43)||(42093521-42093552)
[»] chr5 (3 HSPs)
chr5 (12-43)||(32694705-32694736)
chr5 (12-43)||(39084245-39084276)
chr5 (12-43)||(40366354-40366385)
[»] chr3 (2 HSPs)
chr3 (12-43)||(54281624-54281655)
chr3 (15-43)||(21102698-21102726)
[»] chr1 (3 HSPs)
chr1 (12-43)||(30856189-30856220)
chr1 (12-43)||(39840609-39840640)
chr1 (12-43)||(41147210-41147241)
[»] chr7 (1 HSPs)
chr7 (15-43)||(8408087-8408115)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 120 - 231
Target Start/End: Complemental strand, 53118664 - 53118547
Alignment:
Q  120 gaagggattttatgtttcctttattctttttcatttaataaataaca------tcacgcatcccgcataatcgagaaataaaatcatttcttacatagag 213  Q
    |||||||||||||||||||||||||||||||||||  |||||||| |      ||||||||||| |||||||||||||||||||||||||||||||||||    
T  53118664 gaagggattttatgtttcctttattctttttcattctataaataataataatatcacgcatccctcataatcgagaaataaaatcatttcttacatagag 53118565  T
Q  214 agtatggtaggacttaat 231  Q
    ||||||||||||||||||    
T  53118564 agtatggtaggacttaat 53118547  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 4730693 - 4730661
Alignment:
Q  11 gatgaagtggggtcagggacctttttcaaacaa 43  Q
    |||||||||||||||| ||||||||||||||||    
T  4730693 gatgaagtggggtcagagacctttttcaaacaa 4730661  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 24573854 - 24573822
Alignment:
Q  11 gatgaagtggggtcagggacctttttcaaacaa 43  Q
    |||||||||||| ||||||||||||||||||||    
T  24573854 gatgaagtggggccagggacctttttcaaacaa 24573822  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 28783932 - 28783900
Alignment:
Q  11 gatgaagtggggtcagggacctttttcaaacaa 43  Q
    |||||||||||||||||||||||||||||||||    
T  28783932 gatgaagtggggtcagggacctttttcaaacaa 28783900  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 19281850 - 19281822
Alignment:
Q  15 aagtggggtcagggacctttttcaaacaa 43  Q
    |||||||||||||||||||||||||||||    
T  19281850 aagtggggtcagggacctttttcaaacaa 19281822  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 42093552 - 42093521
Alignment:
Q  12 atgaagtggggtcagggacctttttcaaacaa 43  Q
    ||||||||||||||||||||||||||||||||    
T  42093552 atgaagtggggtcagggacctttttcaaacaa 42093521  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 32694705 - 32694736
Alignment:
Q  12 atgaagtggggtcagggacctttttcaaacaa 43  Q
    ||||||||||||||||||||||||||||||||    
T  32694705 atgaagtggggtcagggacctttttcaaacaa 32694736  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 39084245 - 39084276
Alignment:
Q  12 atgaagtggggtcagggacctttttcaaacaa 43  Q
    ||||||||||||||||||||||||||||||||    
T  39084245 atgaagtggggtcagggacctttttcaaacaa 39084276  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 40366385 - 40366354
Alignment:
Q  12 atgaagtggggtcagggacctttttcaaacaa 43  Q
    ||||||||||||||||||||||||||||||||    
T  40366385 atgaagtggggtcagggacctttttcaaacaa 40366354  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 54281624 - 54281655
Alignment:
Q  12 atgaagtggggtcagggacctttttcaaacaa 43  Q
    ||||||||||||||||||||||||||||||||    
T  54281624 atgaagtggggtcagggacctttttcaaacaa 54281655  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 21102726 - 21102698
Alignment:
Q  15 aagtggggtcagggacctttttcaaacaa 43  Q
    |||||||||||||||||||||||||||||    
T  21102726 aagtggggtcagggacctttttcaaacaa 21102698  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 30856220 - 30856189
Alignment:
Q  12 atgaagtggggtcagggacctttttcaaacaa 43  Q
    ||||||||||||||||||||||||||||||||    
T  30856220 atgaagtggggtcagggacctttttcaaacaa 30856189  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 39840640 - 39840609
Alignment:
Q  12 atgaagtggggtcagggacctttttcaaacaa 43  Q
    ||||||||||||||||||||||||||||||||    
T  39840640 atgaagtggggtcagggacctttttcaaacaa 39840609  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 41147210 - 41147241
Alignment:
Q  12 atgaagtggggtcagggacctttttcaaacaa 43  Q
    ||||||||||||||||||||||||||||||||    
T  41147210 atgaagtggggtcagggacctttttcaaacaa 41147241  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 8408115 - 8408087
Alignment:
Q  15 aagtggggtcagggacctttttcaaacaa 43  Q
    |||||||||||||||||||||||||||||    
T  8408115 aagtggggtcagggacctttttcaaacaa 8408087  T

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