View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_low_26 (Length: 239)
Name: NF18714_low_26
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7056362 - 7056142
Alignment:
| Q |
1 |
taaaattgaaagagaaaatgttacacaaaaacttagtatcctctttaaaataagcgtggtttacttgcctcatgaaagtactcgaggtctcctaaacaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7056362 |
taaaattgaaagagaaaatgttacacaaaaacttagtatcctctttaaaataagcgtggtttacttgcctcatgaaagtactcgagatctcctaaacaca |
7056263 |
T |
|
| Q |
101 |
actcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgactgaaaagatatagttgtagaccattaaacataataacatcattc |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||||| |||||||| |
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| T |
7056262 |
actcatttctggaatctacatcaatatactctcctttacaacttctctgcagtgactgaatagatatagtagtagatcattaagcataatagcatcattc |
7056163 |
T |
|
| Q |
201 |
attaaattcaagtacaaacac |
221 |
Q |
| |
|
|||||||||||||| |||||| |
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|
| T |
7056162 |
attaaattcaagtagaaacac |
7056142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 7004689 - 7004525
Alignment:
| Q |
57 |
tggtttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgac |
156 |
Q |
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|||||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
7004689 |
tggtttacttgcctcatgaaagtactggagatctcttaaacacaactcatttccggaatctacatcaatatactctcctttacaatttctctgcagtgac |
7004590 |
T |
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| Q |
157 |
tgaaaagatatagttgtagaccattaaacataataacatcattcattaaattcaagtacaaacac |
221 |
Q |
| |
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|||||||||||| | ||||||||||| ||||||||||||| || |||||||||||| ||||||| |
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|
| T |
7004589 |
tgaaaagatataatgatagaccattaagcataataacatcactctttaaattcaagttcaaacac |
7004525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 7047468 - 7047304
Alignment:
| Q |
57 |
tggtttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgac |
156 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
7047468 |
tggtttacttgcctcatgaaagtactggagatctcttaaacacaactcatttccggaatctacatcaatatactctcctttacaatttctctgcagtgac |
7047369 |
T |
|
| Q |
157 |
tgaaaagatatagttgtagaccattaaacataataacatcattcattaaattcaagtacaaacac |
221 |
Q |
| |
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|||||||||||| | ||||||||||| ||||||||||||| || |||||||||||| ||||||| |
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| T |
7047368 |
tgaaaagatataatgatagaccattaagcataataacatcactctttaaattcaagttcaaacac |
7047304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 7014336 - 7014172
Alignment:
| Q |
57 |
tggtttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgac |
156 |
Q |
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|
|||||||||||||||||||||||||| ||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
7014336 |
tggtttacttgcctcatgaaagtactggagatctcttaaacacaactcatttccggaatctacatcaatatactctcctttacaatttctctgcagtgac |
7014237 |
T |
|
| Q |
157 |
tgaaaagatatagttgtagaccattaaacataataacatcattcattaaattcaagtacaaacac |
221 |
Q |
| |
|
|||||| ||||| | |||||||||||| ||||||||||||| |||||||||||| ||||||| |
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|
| T |
7014236 |
tgaaaatatataatggtagaccattaagcataataacatcaaaatttaaattcaagttcaaacac |
7014172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 7040023 - 7039863
Alignment:
| Q |
58 |
ggtttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgact |
157 |
Q |
| |
|
|||||||||||||||| |||| ||| ||| |||| ||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||| |
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| T |
7040023 |
ggtttacttgcctcatcaaaggactggagatctcttaaacacaactcatttctggaatctacattaatgtactctcctttacaatttctctgcagtgact |
7039924 |
T |
|
| Q |
158 |
gaaaagatatagttgtagaccattaaacataataacatcattcattaaattcaagtacaaa |
218 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||||||||||| ||||||||||||||||||| |
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| T |
7039923 |
gaaaagatataatggtagacgattaagcataataacatcatccattaaattcaagtacaaa |
7039863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 58 - 220
Target Start/End: Complemental strand, 7027756 - 7027594
Alignment:
| Q |
58 |
ggtttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgact |
157 |
Q |
| |
|
|||||||||||||||| |||| || ||| |||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||| |||| ||||| |
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| T |
7027756 |
ggtttacttgcctcatcaaaggaccggagatctcttaaacacaactcatttctgtaatctacatcaatgtactctcctttacaatttctttgcaatgact |
7027657 |
T |
|
| Q |
158 |
gaaaagatatagttgtagaccattaaacataataacatcattcattaaattcaagtacaaaca |
220 |
Q |
| |
|
||||||||| | | |||||||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
7027656 |
gaaaagataaaatggtagaccattaagcataataacatcatccattaaattcaagtacaaaca |
7027594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 6994819 - 6994718
Alignment:
| Q |
57 |
tggtttacttgcctcatgaaagtactcgaggtctcctaaacacaactcatttctggaatctacgtcaatatactctcctttacaacttctctgcagtgac |
156 |
Q |
| |
|
||||||||||||||||| | || | ||| |||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||| |
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| T |
6994819 |
tggtttacttgcctcatcataggatcggagatctcttaaacacaactcatttctggaatctacatcaacatactctcctttacaatttctctgcagtgac |
6994720 |
T |
|
| Q |
157 |
tg |
158 |
Q |
| |
|
|| |
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|
| T |
6994719 |
tg |
6994718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 7020791 - 7020647
Alignment:
| Q |
9 |
aaagagaaaatgttacacaaaaacttagtatcctctttaaaataagcgtggtttacttgcctcatgaaagtactcgaggtctcctaaacacaactcattt |
108 |
Q |
| |
|
||||||||||| || || ||||| |||||||||||||| |||| |||||||||||||||| |||| || ||| ||| | |||||||||||||| |
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| T |
7020791 |
aaagagaaaatactaaactaaaacatagtatcctctttataata-----ggtttacttgcctcatcaaaggaccggagatcttttgaacacaactcattt |
7020697 |
T |
|
| Q |
109 |
ctggaatctacgtcaatatactctcctttacaacttctctgcagtgactg |
158 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7020696 |
ttggaatctacatgaatatactctcctttacaatttctctgcagtgactg |
7020647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7047539 - 7047493
Alignment:
| Q |
1 |
taaaattgaaagagaaaatgttacacaaaaacttagtatcctcttta |
47 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
7047539 |
taaaattgaaagagaaaatgttacaccaaaacttagcatcctcttta |
7047493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 7040090 - 7040044
Alignment:
| Q |
6 |
ttgaaagagaaaatgttacacaaaaacttagtatcctctttaaaata |
52 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||||||||| |||| |
|
|
| T |
7040090 |
ttgaaagagaaaatgctacaccaaaacgtagtatcctctttataata |
7040044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 54733627 - 54733590
Alignment:
| Q |
2 |
aaaattgaaagagaaaatgttacacaaaaacttagtat |
39 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
54733627 |
aaaattgaaagagtaaatgttacaccaaaacttagtat |
54733590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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