View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_low_29 (Length: 227)
Name: NF18714_low_29
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 28687153 - 28686962
Alignment:
| Q |
16 |
aaaatataaattatggaacctcattagacaacttagcagttgtagacaagtttttgtcaaatttactggcaaggtcacgaactgagatacacttgttctg |
115 |
Q |
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| T |
28687153 |
aaaatataaattatggaacctcattagacaacttagcagttgtagacaagtttttgtcaaatttactggcaaggtcacgaactgagatacacttgttctg |
28687054 |
T |
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| Q |
116 |
ctctgacaaattgaaagcttcttgttcaataacgtctttcaaaggaccatggttatcctcagcaggctgttgaaaaacttgatgatcaactt |
207 |
Q |
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| T |
28687053 |
ctctgacaaattgaaagcttcttgttcaataacatctttcaaaggaccatggttatcctcagcaggctgttgaaaaacttgatgatcaactt |
28686962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 6642015 - 6641829
Alignment:
| Q |
16 |
aaaatataaattatggaacctcattagacaacttagcagttgtagacaagtttttgtcaaatttactggcaaggtcacgaactgagatacacttgttctg |
115 |
Q |
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| T |
6642015 |
aaaatataaattatggaacctcattagacaactttgctgttgcagacaagttcttgtcaaattcactatcaaggtcaaaaattgagatacgtttgttctg |
6641916 |
T |
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| Q |
116 |
ctctgacaaattgaaagcttcttgttcaataacgtctttcaaaggaccatggttatcctcagcaggctgttg-aaaaacttgatgat |
201 |
Q |
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| T |
6641915 |
ctctgacaaattggaagcttcttgttcaataacatcttttaaaggaccatggttatcctcaggaggctcttgaaaaaacttgatgat |
6641829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 34814844 - 34815038
Alignment:
| Q |
12 |
gaagaaaatataaattatggaacctcattagacaacttagcagttgtagacaagtttttgtcaaatttactggcaaggtcacgaactgagatacacttgt |
111 |
Q |
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| T |
34814844 |
gaagaaaatttatattatggaacctcattagagagcttagcagctgctgacaagttcttgtcaaatttactggcaaggtcacggactgagatacggttgt |
34814943 |
T |
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| Q |
112 |
tctgctctgacaaattgaaagcttcttgttcaataacgtctttca---aaggaccatggttatcctcagcaggctgttgaaaaacttgatgatca |
203 |
Q |
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| T |
34814944 |
tctgttctgacaaattggaagcttcttgttcaataacttctttcaaagaaggaccctgattatcctcagcagtctcttgaaaaacttgatgatca |
34815038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 2691134 - 2691022
Alignment:
| Q |
16 |
aaaatataaattatggaacctcattagacaacttagcagttgtagacaagtttttgtcaaatttactggcaaggtcacgaactgagatacacttgttctg |
115 |
Q |
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|||||||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||| |||||||||| || |||||||| |||||| || |
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| T |
2691134 |
aaaatataaattatggaacctcgttagacaactt-------gcagacaagttcttgtcaaatttactagcaaggtcacaaattgagatacgcttgttttg |
2691042 |
T |
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| Q |
116 |
ctctgacaaattgaaagctt |
135 |
Q |
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| T |
2691041 |
ctttgacaaattgaaagctt |
2691022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 2689338 - 2689267
Alignment:
| Q |
135 |
tcttgttcaataacgtctttcaaaggaccatggttatcctcagcaggctgttgaaaaacttgatgatcaact |
206 |
Q |
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| T |
2689338 |
tcttgttcgataacgtatttcaaaggaccatgtttaccctcagcaggctcttgaaaaacttgatgatcaact |
2689267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 12028898 - 12028801
Alignment:
| Q |
89 |
gtcacgaactgagatacacttgttctgctctgacaaattgaaagcttcttgttcaataacgtcttt---caaaggaccatggttatcctcagcaggct |
183 |
Q |
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| T |
12028898 |
gtcatgaattgagatacgcttgttttgctcttacaaattggaagcttcttgttaaataacaccttttaaaaaaggaccatggttatcctcaacaggct |
12028801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 53143785 - 53143752
Alignment:
| Q |
132 |
gcttcttgttcaataacgtctttcaaaggaccat |
165 |
Q |
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| T |
53143785 |
gcttgttgttcaataacgtctttcaaaggaccat |
53143752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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