View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18714_low_30 (Length: 227)
Name: NF18714_low_30
Description: NF18714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18714_low_30 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 9538179 - 9538401
Alignment:
| Q |
5 |
catttacaactcctaagaagaattgccatagcatgaagagttgtagaaagcatagttggacctttatatgtaacaaaattactcttctttataatccaaa |
104 |
Q |
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| T |
9538179 |
catttacaactcctaagaagaattgccatagcatgaagagttgtagaaagcatagttggacctttatatgtaacaaaattactcttctttataatccaaa |
9538278 |
T |
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| Q |
105 |
catttcctacttgaccaaaaacaggttcattagtcacataatcaatcacatctctatgatctttctttggagcaccatgatccatatgaatcaaataata |
204 |
Q |
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| T |
9538279 |
catttcccacttgaccaaaaacaggttcattactcacataatcaatcacatctctatgatctttctttggtgcaccatgatccatatgaatcaaataata |
9538378 |
T |
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| Q |
205 |
attccctggatggtacaaagcct |
227 |
Q |
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| T |
9538379 |
attccctggatggtacaaagcct |
9538401 |
T |
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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 33717763 - 33717586
Alignment:
| Q |
18 |
taagaagaattgccatagcatgaagagttgtagaaagcatagttggacctttatatgtaacaaaattactcttctttataatccaaacatttcctacttg |
117 |
Q |
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| T |
33717763 |
taagaagcattgccatagcatgaagagtagttgcaagcatagttggtcctctataagttaccaaattaggcttcccaacaatccaaacattcccaacttg |
33717664 |
T |
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| Q |
118 |
accaaaaacaggttcattagtcacataatcaatcacatctctatgatctttctttggagcaccatgatccatatgaat |
195 |
Q |
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| T |
33717663 |
actaaaaacaggatcattagccacatattctgccacatctttatgttctgcatctggagcaccataatccatgtgaat |
33717586 |
T |
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